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The map label for this gene is nodW [H]

Identifier: 186475411

GI number: 186475411

Start: 728276

End: 728998

Strand: Direct

Name: nodW [H]

Synonym: Bphy_0645

Alternate gene names: 186475411

Gene position: 728276-728998 (Clockwise)

Preceding gene: 186475410

Following gene: 186475412

Centisome position: 20.93

GC content: 64.59

Gene sequence:

>723_bases
ATGAACCCGTCTGCGCCGCTCGTCTACGTCGTCGACGACGACCCGTCGGTGCGCCGCGCGCTCACGCGGCTTATCAGGTC
GGCGGGCCACGAGGTCGAGGCTTATGGTTCGGCCCGCGAATTTCTCGCGCATTGGGGCGTCGAGCGGACGCCGGCGTGCG
TGGTGCTCGACGTACAGTTGCCAGACCTGAGCGGGCTCGAACTGCAGCGTGAACTCGATGCCCGCTTGCCCATCATTTTT
CTGACGGGACACGGCGACATCGCGATGACGGTCGGCGCGATCAAGGCCGGCGCGACCGATTTCCTCACCAAGCCCGTGCG
CGACGACGATCTGCTGCACGCTATCGATCACGCGCTCATGCGTTCCGCCGAAGTGTCGAAGTCGATGCACGAACTTGAAG
AATTGCGCAGCCGCGTCGGACGCCTGACGGTGCGAGAGCGCGAAGTGATGAACCTGATCGTGCTCGGCCGTTTGAACAAG
CAGGTGGCGTGCGAGCTGGGCACTGTCGAAAAAACCGTCAAGGCACATCGCGCGCGCGTGATGCAGAAGATGGAGGTCGG
CTCGCTCGCCGAACTGGTGCGCATCGCCGACAAGGTAGCCGTTGCGAGCAACGCGCACCGTGCCGTCGAACCGCAAGCGG
ACGCTTCCGGCGCCGCGTGCGAGCCCACAGCCAAGCGGATACGAGACCAAGGTCCAATACCACCGACGCCCGCAGTCTCA
TAG

Upstream 100 bases:

>100_bases
GCCTTTGGGCAGAGAACAACGCGGATCAGGGCATGACGTTCTATGTCGCGCTGCCGGCAGCGCGTGAAGCAGGCAGCGCG
TGCGCTGCGCAGGCGGCGTC

Downstream 100 bases:

>100_bases
TCTATTGCTGAGACGCCCACGCATCGTCCGCGTGGACGTGGCGGCTCAACGGGCTAATCGGAATGGGCACAAACAAACCA
TTCGTCGTCGTGGTGGACGA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNPSAPLVYVVDDDPSVRRALTRLIRSAGHEVEAYGSAREFLAHWGVERTPACVVLDVQLPDLSGLELQRELDARLPIIF
LTGHGDIAMTVGAIKAGATDFLTKPVRDDDLLHAIDHALMRSAEVSKSMHELEELRSRVGRLTVREREVMNLIVLGRLNK
QVACELGTVEKTVKAHRARVMQKMEVGSLAELVRIADKVAVASNAHRAVEPQADASGAACEPTAKRIRDQGPIPPTPAVS

Sequences:

>Translated_240_residues
MNPSAPLVYVVDDDPSVRRALTRLIRSAGHEVEAYGSAREFLAHWGVERTPACVVLDVQLPDLSGLELQRELDARLPIIF
LTGHGDIAMTVGAIKAGATDFLTKPVRDDDLLHAIDHALMRSAEVSKSMHELEELRSRVGRLTVREREVMNLIVLGRLNK
QVACELGTVEKTVKAHRARVMQKMEVGSLAELVRIADKVAVASNAHRAVEPQADASGAACEPTAKRIRDQGPIPPTPAVS
>Mature_240_residues
MNPSAPLVYVVDDDPSVRRALTRLIRSAGHEVEAYGSAREFLAHWGVERTPACVVLDVQLPDLSGLELQRELDARLPIIF
LTGHGDIAMTVGAIKAGATDFLTKPVRDDDLLHAIDHALMRSAEVSKSMHELEELRSRVGRLTVREREVMNLIVLGRLNK
QVACELGTVEKTVKAHRARVMQKMEVGSLAELVRIADKVAVASNAHRAVEPQADASGAACEPTAKRIRDQGPIPPTPAVS

Specific function: Member of the two-component regulatory system nodV/nodW probably involved in the regulation of the transcription of genes involved in the nodulation process [H]

COG id: COG4566

COG function: function code T; Response regulator

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790102, Length=192, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790299, Length=121, Percent_Identity=32.2314049586777, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=28.695652173913, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788905, Length=119, Percent_Identity=36.1344537815126, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786747, Length=207, Percent_Identity=24.1545893719807, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 26138; Mature: 26138

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSAPLVYVVDDDPSVRRALTRLIRSAGHEVEAYGSAREFLAHWGVERTPACVVLDVQL
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCEEEEEEEEC
PDLSGLELQRELDARLPIIFLTGHGDIAMTVGAIKAGATDFLTKPVRDDDLLHAIDHALM
CCCCCCHHHHHHCCCCCEEEEECCCCEEEEEHHHHCCCHHHHCCCCCCHHHHHHHHHHHH
RSAEVSKSMHELEELRSRVGRLTVREREVMNLIVLGRLNKQVACELGTVEKTVKAHRARV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
MQKMEVGSLAELVRIADKVAVASNAHRAVEPQADASGAACEPTAKRIRDQGPIPPTPAVS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNPSAPLVYVVDDDPSVRRALTRLIRSAGHEVEAYGSAREFLAHWGVERTPACVVLDVQL
CCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCEEEEEEEEC
PDLSGLELQRELDARLPIIFLTGHGDIAMTVGAIKAGATDFLTKPVRDDDLLHAIDHALM
CCCCCCHHHHHHCCCCCEEEEECCCCEEEEEHHHHCCCHHHHCCCCCCHHHHHHHHHHHH
RSAEVSKSMHELEELRSRVGRLTVREREVMNLIVLGRLNKQVACELGTVEKTVKAHRARV
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
MQKMEVGSLAELVRIADKVAVASNAHRAVEPQADASGAACEPTAKRIRDQGPIPPTPAVS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2320582; 11157954; 12597275 [H]