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The map label for this gene is ycjO [C]

Identifier: 186475259

GI number: 186475259

Start: 559490

End: 560428

Strand: Direct

Name: ycjO [C]

Synonym: Bphy_0491

Alternate gene names: 186475259

Gene position: 559490-560428 (Clockwise)

Preceding gene: 186475258

Following gene: 186475260

Centisome position: 16.08

GC content: 61.13

Gene sequence:

>939_bases
ATGCGTCAACACTTGCGTCTACCCCTCATGCATGCCGAACCCCAGACCGAACACGAGCGCGAAGAGCGCAAGGCCGCGCA
TGCGCGCTGGCTGGTGAGCCCATCCGTCGGCGTCCTCGTCCTGTGGATGGCCATTCCACTCGCGATGACGATCTGGTTTT
CGTTCTCGCGCTACAACCTGCTGAACCCCGATGAAAAGGGCTTCACGGGGCTCGATAACTACAAGTACCTCGCCAGCGAC
CCGGCCTTCGGTCCGTCGATCGCCCATACGCTGGAATTGATCGTCGCCGTGCTGGTCATCACCGTGGTCGGCGGCGTGCT
GCTCGCGGTGCTGTTCGACCGCAAGTTCTACGGGCAGGGTATCGCGCGGTTACTCGCGATCGCGCCGTTCTTCGTGATGC
CGACTGTCTCCGCGCTGATCTGGAAGAACATGATCCTGCACCCGGTGTACGGGCTGGTGGCGGACGGCATGCGTGCCGTC
GGGCTCGCGCCGGTCGACTGGTTCGCGGATTATCCATTGACATCCGTGATCATCATCGTCGCGTGGCAGTGGTTGCCGTT
CGCGTTCCTGATTCTCTTCACCGCGATCCAGTCGCTCGACCAGGAGCAGAAGGAAGCAGCGAAGATCGACGGCGCCGGCC
CGTTCGCGATGTTCTTCTTCATCACGCTGCCGCACCTGAAGCGTGCGATCGCTGTCGTCGTGATGATGGAAACCATTTTC
CTGCTGTCGATCTTCGCCGAAATCTACACGACGACGGGCGGCGGTCCAGGCAACGCGACCACCAACCTGTCGTACCTGAT
CTATGCGCTCGGCCTGCAACAGTTCGACGTCGGCCTTGCATCCGCAGGCGGGATTCTCGCCGTGGTGCTCGCGAATATCG
TGTCGTTCTTCCTCGTGCGCATGCTCGCGAAGAACCTGAAAGGGGAGTACGAAAAATGA

Upstream 100 bases:

>100_bases
CGGCCGACAGTGCAGTTCAACTGCATCGTCAGCCGGACTCCTGGCAGCACAGTGAGCCGCACGCCCCGCGGCCCGCGCAC
TACCCAAGAGGTGGTCCATC

Downstream 100 bases:

>100_bases
GCCAGCTTGCCGCTACACCTGTCACGACGAAACCGACGAAAGCCAATTCGCCGCTCGCGGTCGTCGGCCGCAGCATTCCG
GGCATCCTCGCGTGGTTCAT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MRQHLRLPLMHAEPQTEHEREERKAAHARWLVSPSVGVLVLWMAIPLAMTIWFSFSRYNLLNPDEKGFTGLDNYKYLASD
PAFGPSIAHTLELIVAVLVITVVGGVLLAVLFDRKFYGQGIARLLAIAPFFVMPTVSALIWKNMILHPVYGLVADGMRAV
GLAPVDWFADYPLTSVIIIVAWQWLPFAFLILFTAIQSLDQEQKEAAKIDGAGPFAMFFFITLPHLKRAIAVVVMMETIF
LLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANIVSFFLVRMLAKNLKGEYEK

Sequences:

>Translated_312_residues
MRQHLRLPLMHAEPQTEHEREERKAAHARWLVSPSVGVLVLWMAIPLAMTIWFSFSRYNLLNPDEKGFTGLDNYKYLASD
PAFGPSIAHTLELIVAVLVITVVGGVLLAVLFDRKFYGQGIARLLAIAPFFVMPTVSALIWKNMILHPVYGLVADGMRAV
GLAPVDWFADYPLTSVIIIVAWQWLPFAFLILFTAIQSLDQEQKEAAKIDGAGPFAMFFFITLPHLKRAIAVVVMMETIF
LLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANIVSFFLVRMLAKNLKGEYEK
>Mature_312_residues
MRQHLRLPLMHAEPQTEHEREERKAAHARWLVSPSVGVLVLWMAIPLAMTIWFSFSRYNLLNPDEKGFTGLDNYKYLASD
PAFGPSIAHTLELIVAVLVITVVGGVLLAVLFDRKFYGQGIARLLAIAPFFVMPTVSALIWKNMILHPVYGLVADGMRAV
GLAPVDWFADYPLTSVIIIVAWQWLPFAFLILFTAIQSLDQEQKEAAKIDGAGPFAMFFFITLPHLKRAIAVVVMMETIF
LLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANIVSFFLVRMLAKNLKGEYEK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=279, Percent_Identity=32.258064516129, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1789861, Length=300, Percent_Identity=25.6666666666667, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790465, Length=267, Percent_Identity=28.4644194756554, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34519; Mature: 34519

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQHLRLPLMHAEPQTEHEREERKAAHARWLVSPSVGVLVLWMAIPLAMTIWFSFSRYNL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
LNPDEKGFTGLDNYKYLASDPAFGPSIAHTLELIVAVLVITVVGGVLLAVLFDRKFYGQG
CCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IARLLAIAPFFVMPTVSALIWKNMILHPVYGLVADGMRAVGLAPVDWFADYPLTSVIIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCCHHHHHHHH
AWQWLPFAFLILFTAIQSLDQEQKEAAKIDGAGPFAMFFFITLPHLKRAIAVVVMMETIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANIVSFFLVR
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHH
MLAKNLKGEYEK
HHHHHHCCCCCC
>Mature Secondary Structure
MRQHLRLPLMHAEPQTEHEREERKAAHARWLVSPSVGVLVLWMAIPLAMTIWFSFSRYNL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
LNPDEKGFTGLDNYKYLASDPAFGPSIAHTLELIVAVLVITVVGGVLLAVLFDRKFYGQG
CCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IARLLAIAPFFVMPTVSALIWKNMILHPVYGLVADGMRAVGLAPVDWFADYPLTSVIIIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHCCCHHHHHHHH
AWQWLPFAFLILFTAIQSLDQEQKEAAKIDGAGPFAMFFFITLPHLKRAIAVVVMMETIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSIFAEIYTTTGGGPGNATTNLSYLIYALGLQQFDVGLASAGGILAVVLANIVSFFLVR
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHH
MLAKNLKGEYEK
HHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]