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The map label for this gene is ykfC [H]

Identifier: 186475215

GI number: 186475215

Start: 507997

End: 509703

Strand: Direct

Name: ykfC [H]

Synonym: Bphy_0447

Alternate gene names: 186475215

Gene position: 507997-509703 (Clockwise)

Preceding gene: 186475214

Following gene: 186475216

Centisome position: 14.6

GC content: 56.65

Gene sequence:

>1707_bases
ATGAAAGTATCTGGTCGAAAGACCGGATCTGCGCTTTCCCACGCGCCTGACAACTGGTACGCCGTAGATTGGCGTCGGGT
CGAACGGAACGTGCGAGGGATGCAGATTCGAATTGCGAAGGCGACGCGGGAAGGTGACTGGCGCAGGGTGAAAGCCCTGC
AGCGGATGCTGACCCGCACGTTGTCCGCAAAGCTGTATGCGGTGCGACGTGTTACGCAGAACCAGGGTGCGCGAACGGCT
GGAGTCGATCGCGAGCTATGGGATTCGCCTGAGAGCCGATGGGAAGCCGTCGGCAGGTTGAAGCGGCACGGATATAAGGC
TCTGCCATTACGGAGGGTCTTTATCCCCAAGGCGAACGGGAAGGAGCGCCCTCTGGGCATTCCGACCATGCGGGATAGGG
CGATGCAAGCCCTGTATCTGCTGGCCTTGGAGCCGGTAGCAGAGTCGACGAGTGACCCGAACTCTTATGGGTTCAGGCTT
AACCGTTCGACGGCTGATGCCATGTCTCAGATTTTCGTTGTCATGGCCCGTCGCAGATCAGCGCGATGGGTACTTGAAGC
GGACATCAAAGGATGCTTTGACCACATCAACCACAAGTGGTTGGAAAGCAATGTCCCGATGGACAGGGTGATCCTCCGCA
AATGGTTGAAAGCTGGCCTGATTTACAAAGGGCAGTTACAGGCGACGATGGCCGGTACGCCGCAGGGAGGCATCATTTCT
CCGACGCTGGCAAACGTGACGTTGAACGGGCTGGAACGTGAACTGATTGCGCAGCTCACTGCGAAATTTGGAATCGGGAA
GGCGAAGAAGCTGAAAGTGAACGTGGTGCGATACGCGGACGACTTCGTCATTACCGGCGACTCGAAAGAGATGCTGGAAC
GCGAAGTCAGGCCTTGGGTAGAAGCCTTCCTCGAAGTGCGGGGATTGCAACTATCGGAGGAGAAGACCCGGATCGTTCAT
ATTGACGAAGGCTTTGATTTCCTTGGGTGGAACTTCCGGAAGTACTCGGGAACGCTACTCATCAAGCCAAGCAAGAAGAA
CGTGCAGACGTTCTATCGCAAGGTGGCGGATACGATCAGCGGTCATAAGGCGGTCAAGCAGGAGGAGTTAATTCGCCTGC
TCAATCCGATACTACGGGGCTGGGCGCAGTATCACTGCCCTGTAGTGGCCAAGCAGGCGTACAGCCGCATGGAGTCGTTG
GTGTTTCAGCGGCTCTGGCGGTGGTCCAAGCGGCGGCATCCGAACAAGAACGCCGACTGGGTGAGGCGGAAGTACTTTCA
CTCCGTTGGTAATCGGCATTGGGTGTTCGCTGCTCCTGTCATTCGCGAGGACGGTAGTAAGGGTCTGCTTGAGTTGTACC
AAATCAGCGGTACGGAAATCAGGCGCCACAAGAAGGTCAAAGGGGAATTCAATCCCTTTGATCTCGTGTGGGAGCAATAC
GGCGAGCATCTGCGGCAGGAGCGTATGTGGGATTCGATGCGCTATCGAAAGCAGTGGGCTTCGCTGTACATGTTACAGAG
TGGGCAGTGTGCACACTGTGGCTGTGCCCTGACGGACGAGACGGGCTGGCACGACCATCATCTGGAGTATCGGATGTATG
GCGGTTCAGACGCTCTATCGAACAGGGTATTGCTTCACCCGGACTGCCACCGGCAAGTGCACGTTGGTAAACTTGTCGTA
GCTAAGCCGGCCCCGTTGCAGCACTAA

Upstream 100 bases:

>100_bases
GCTCATATTGAGGTTTCTGTTGTTCCCCAGCGGGGTGTGTCTTCCCCGCTGGGGGAGATGCGCCTTCTGCCGGGGATCTA
ATCCAAGGTAGGAGAGCAGC

Downstream 100 bases:

>100_bases
CGGGGCTTCGTATAAGAAATATGTAGGCTTGAGCCGTATGCGGGGAAACTCGCACGTACGGTTCTTAGGGGGCCCCTCTT
CCGCAAGGAAGGGGGGCTAC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MKVSGRKTGSALSHAPDNWYAVDWRRVERNVRGMQIRIAKATREGDWRRVKALQRMLTRTLSAKLYAVRRVTQNQGARTA
GVDRELWDSPESRWEAVGRLKRHGYKALPLRRVFIPKANGKERPLGIPTMRDRAMQALYLLALEPVAESTSDPNSYGFRL
NRSTADAMSQIFVVMARRRSARWVLEADIKGCFDHINHKWLESNVPMDRVILRKWLKAGLIYKGQLQATMAGTPQGGIIS
PTLANVTLNGLERELIAQLTAKFGIGKAKKLKVNVVRYADDFVITGDSKEMLEREVRPWVEAFLEVRGLQLSEEKTRIVH
IDEGFDFLGWNFRKYSGTLLIKPSKKNVQTFYRKVADTISGHKAVKQEELIRLLNPILRGWAQYHCPVVAKQAYSRMESL
VFQRLWRWSKRRHPNKNADWVRRKYFHSVGNRHWVFAAPVIREDGSKGLLELYQISGTEIRRHKKVKGEFNPFDLVWEQY
GEHLRQERMWDSMRYRKQWASLYMLQSGQCAHCGCALTDETGWHDHHLEYRMYGGSDALSNRVLLHPDCHRQVHVGKLVV
AKPAPLQH

Sequences:

>Translated_568_residues
MKVSGRKTGSALSHAPDNWYAVDWRRVERNVRGMQIRIAKATREGDWRRVKALQRMLTRTLSAKLYAVRRVTQNQGARTA
GVDRELWDSPESRWEAVGRLKRHGYKALPLRRVFIPKANGKERPLGIPTMRDRAMQALYLLALEPVAESTSDPNSYGFRL
NRSTADAMSQIFVVMARRRSARWVLEADIKGCFDHINHKWLESNVPMDRVILRKWLKAGLIYKGQLQATMAGTPQGGIIS
PTLANVTLNGLERELIAQLTAKFGIGKAKKLKVNVVRYADDFVITGDSKEMLEREVRPWVEAFLEVRGLQLSEEKTRIVH
IDEGFDFLGWNFRKYSGTLLIKPSKKNVQTFYRKVADTISGHKAVKQEELIRLLNPILRGWAQYHCPVVAKQAYSRMESL
VFQRLWRWSKRRHPNKNADWVRRKYFHSVGNRHWVFAAPVIREDGSKGLLELYQISGTEIRRHKKVKGEFNPFDLVWEQY
GEHLRQERMWDSMRYRKQWASLYMLQSGQCAHCGCALTDETGWHDHHLEYRMYGGSDALSNRVLLHPDCHRQVHVGKLVV
AKPAPLQH
>Mature_568_residues
MKVSGRKTGSALSHAPDNWYAVDWRRVERNVRGMQIRIAKATREGDWRRVKALQRMLTRTLSAKLYAVRRVTQNQGARTA
GVDRELWDSPESRWEAVGRLKRHGYKALPLRRVFIPKANGKERPLGIPTMRDRAMQALYLLALEPVAESTSDPNSYGFRL
NRSTADAMSQIFVVMARRRSARWVLEADIKGCFDHINHKWLESNVPMDRVILRKWLKAGLIYKGQLQATMAGTPQGGIIS
PTLANVTLNGLERELIAQLTAKFGIGKAKKLKVNVVRYADDFVITGDSKEMLEREVRPWVEAFLEVRGLQLSEEKTRIVH
IDEGFDFLGWNFRKYSGTLLIKPSKKNVQTFYRKVADTISGHKAVKQEELIRLLNPILRGWAQYHCPVVAKQAYSRMESL
VFQRLWRWSKRRHPNKNADWVRRKYFHSVGNRHWVFAAPVIREDGSKGLLELYQISGTEIRRHKKVKGEFNPFDLVWEQY
GEHLRQERMWDSMRYRKQWASLYMLQSGQCAHCGCALTDETGWHDHHLEYRMYGGSDALSNRVLLHPDCHRQVHVGKLVV
AKPAPLQH

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=328, Percent_Identity=26.219512195122, Blast_Score=100, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6226520, Length=333, Percent_Identity=26.1261261261261, Blast_Score=95, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 65821; Mature: 65821

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVSGRKTGSALSHAPDNWYAVDWRRVERNVRGMQIRIAKATREGDWRRVKALQRMLTRT
CCCCCCCCCCHHHCCCCCCEEEHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
LSAKLYAVRRVTQNQGARTAGVDRELWDSPESRWEAVGRLKRHGYKALPLRRVFIPKANG
HHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
KERPLGIPTMRDRAMQALYLLALEPVAESTSDPNSYGFRLNRSTADAMSQIFVVMARRRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCC
ARWVLEADIKGCFDHINHKWLESNVPMDRVILRKWLKAGLIYKGQLQATMAGTPQGGIIS
CCEEEEHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCC
PTLANVTLNGLERELIAQLTAKFGIGKAKKLKVNVVRYADDFVITGDSKEMLEREVRPWV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCHHHHHHHHHHHH
EAFLEVRGLQLSEEKTRIVHIDEGFDFLGWNFRKYSGTLLIKPSKKNVQTFYRKVADTIS
HHHHHHHCCEECCCCCEEEEEECCCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHH
GHKAVKQEELIRLLNPILRGWAQYHCPVVAKQAYSRMESLVFQRLWRWSKRRHPNKNADW
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VRRKYFHSVGNRHWVFAAPVIREDGSKGLLELYQISGTEIRRHKKVKGEFNPFDLVWEQY
HHHHHHHHCCCCEEEEECCCEECCCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHH
GEHLRQERMWDSMRYRKQWASLYMLQSGQCAHCGCALTDETGWHDHHLEYRMYGGSDALS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCHHHC
NRVLLHPDCHRQVHVGKLVVAKPAPLQH
CCEEECCCCCCEEEECEEEEECCCCCCC
>Mature Secondary Structure
MKVSGRKTGSALSHAPDNWYAVDWRRVERNVRGMQIRIAKATREGDWRRVKALQRMLTRT
CCCCCCCCCCHHHCCCCCCEEEHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
LSAKLYAVRRVTQNQGARTAGVDRELWDSPESRWEAVGRLKRHGYKALPLRRVFIPKANG
HHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
KERPLGIPTMRDRAMQALYLLALEPVAESTSDPNSYGFRLNRSTADAMSQIFVVMARRRS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCC
ARWVLEADIKGCFDHINHKWLESNVPMDRVILRKWLKAGLIYKGQLQATMAGTPQGGIIS
CCEEEEHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCC
PTLANVTLNGLERELIAQLTAKFGIGKAKKLKVNVVRYADDFVITGDSKEMLEREVRPWV
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCEEEECCCHHHHHHHHHHHH
EAFLEVRGLQLSEEKTRIVHIDEGFDFLGWNFRKYSGTLLIKPSKKNVQTFYRKVADTIS
HHHHHHHCCEECCCCCEEEEEECCCCCCCCCEEEECCEEEEECCHHHHHHHHHHHHHHHH
GHKAVKQEELIRLLNPILRGWAQYHCPVVAKQAYSRMESLVFQRLWRWSKRRHPNKNADW
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
VRRKYFHSVGNRHWVFAAPVIREDGSKGLLELYQISGTEIRRHKKVKGEFNPFDLVWEQY
HHHHHHHHCCCCEEEEECCCEECCCCCCHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHH
GEHLRQERMWDSMRYRKQWASLYMLQSGQCAHCGCALTDETGWHDHHLEYRMYGGSDALS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCHHHC
NRVLLHPDCHRQVHVGKLVVAKPAPLQH
CCEEECCCCCCEEEECEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]