| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is ydhP [H]
Identifier: 186475184
GI number: 186475184
Start: 473642
End: 474820
Strand: Direct
Name: ydhP [H]
Synonym: Bphy_0415
Alternate gene names: 186475184
Gene position: 473642-474820 (Clockwise)
Preceding gene: 186475183
Following gene: 186475185
Centisome position: 13.61
GC content: 66.24
Gene sequence:
>1179_bases ATGCCCATCCCCTTGCTCGCGCTCGCCATCAGCGCCTTCGCCATCGGCACGACCGAGTTCGTCATCATGGGCTTGCTGCC CGAAGTGGCGAAGGATCTCGCCGTGTCGCTGCCGTCAGCCGGTCTGCTCGTCAGCGGCTATGCGCTCGGCGTGGCCGTCG GCGCGCCGCTGCTCGCCGTCGTCACCAGCAGGATGCCACGCAAGCTGGCGCTGCAATTGCTGATGGGCGTGTTCATTGTC GGCAACTTGCTGTGCGCGATCGCATCCGACTATTCCGTGCTGATGATCGCGCGCGTCGTGACGTCGTTCGCGCATGGCTC CTTTTTTGGCATCGGCGCGGTGGTGGCCGCGTCGCTCGTGCCGCAGGAAAAGCGTGCAAGCGCGATTGCGCTGATGTTCA CCGGCCTTACGCTGGCAAACGTGCTCGGCGTGCCGTTCGGTACGTTCATCGGTCAGCAGTTCGGCTGGCGCGTCGCGTTC TGGATCGTCGCGGCATTCGGCGTGATGTCGCTCGCGGGTGTCACCGCGCTTGTGCCGAACCGGCACGACACGGGACCGGC CGGTCTCGGGCACGAAGTGCGCGTGCTGAAAGAGCCGCAAGTATGGCTTGCGCTGACGATGACGGTGCTCGGCTTCGGCG GCGTGTTCGTCGTGTTCACTTATATCGCGCCGATTCTCGAACAGGTGGGCGGCTTCACGCCTCACGGCGTCACGCTGATC CTCGTGCTGTTCGGCGTCGGCCTGACGGTCGGCAACACGGTGGGCGGCAAGCTTGCGGACCGTTCGCTGATGCCGTCGCT GATGGGCATTCTGATCGCGCTCGCCGTCGTGATGGCCGTGTTCGCGCACACGAGCCACTCGCAGGTTGCGGCGGCCGTCA CGGTGTTCATCTGGGGCATCGCGGCGTTCGCGACGGTGCCGCCGCTTCAGATGCGTGTCGTCGAAAAAGCGAAGGCTGCG CCGAATCTCGCGTCGACGCTCAACATCGGCGCGTTCAATGTCGGCAACGCGGGCGGCGCATGGCTGGGCGGGCTGGCGAT CAGTCACGGTTACGGGCTCGATGCGCTGCCGTACGTGGCCGCTGTGGTCGCGCTGGCCGCTTTGGGCTTGACGTGGATCG CCGCGCGGCTGGATGCACCCGCGGCCATCGCGACGCGGAAAATGCGCGAGCGGGTTTGA
Upstream 100 bases:
>100_bases AATTGTTCGTCGCGCTCGCGTCGTCCGTCGTCGTCGAGTTCGTGACGGCGGCGCGCAACGCCGCGCGCGCGTCCTTCTGA ACCGTCTTCTGGAGCTTCAC
Downstream 100 bases:
>100_bases GTCGCGCTTCGCTGCAAGATGCTTTCGCTGCCCATGCTTCGCGAAGCGCGGGCATCTGCCGTTCGATCCGATGCCGAGGA TGTGCCATGAACAGGCCGCA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MPIPLLALAISAFAIGTTEFVIMGLLPEVAKDLAVSLPSAGLLVSGYALGVAVGAPLLAVVTSRMPRKLALQLLMGVFIV GNLLCAIASDYSVLMIARVVTSFAHGSFFGIGAVVAASLVPQEKRASAIALMFTGLTLANVLGVPFGTFIGQQFGWRVAF WIVAAFGVMSLAGVTALVPNRHDTGPAGLGHEVRVLKEPQVWLALTMTVLGFGGVFVVFTYIAPILEQVGGFTPHGVTLI LVLFGVGLTVGNTVGGKLADRSLMPSLMGILIALAVVMAVFAHTSHSQVAAAVTVFIWGIAAFATVPPLQMRVVEKAKAA PNLASTLNIGAFNVGNAGGAWLGGLAISHGYGLDALPYVAAVVALAALGLTWIAARLDAPAAIATRKMRERV
Sequences:
>Translated_392_residues MPIPLLALAISAFAIGTTEFVIMGLLPEVAKDLAVSLPSAGLLVSGYALGVAVGAPLLAVVTSRMPRKLALQLLMGVFIV GNLLCAIASDYSVLMIARVVTSFAHGSFFGIGAVVAASLVPQEKRASAIALMFTGLTLANVLGVPFGTFIGQQFGWRVAF WIVAAFGVMSLAGVTALVPNRHDTGPAGLGHEVRVLKEPQVWLALTMTVLGFGGVFVVFTYIAPILEQVGGFTPHGVTLI LVLFGVGLTVGNTVGGKLADRSLMPSLMGILIALAVVMAVFAHTSHSQVAAAVTVFIWGIAAFATVPPLQMRVVEKAKAA PNLASTLNIGAFNVGNAGGAWLGGLAISHGYGLDALPYVAAVVALAALGLTWIAARLDAPAAIATRKMRERV >Mature_391_residues PIPLLALAISAFAIGTTEFVIMGLLPEVAKDLAVSLPSAGLLVSGYALGVAVGAPLLAVVTSRMPRKLALQLLMGVFIVG NLLCAIASDYSVLMIARVVTSFAHGSFFGIGAVVAASLVPQEKRASAIALMFTGLTLANVLGVPFGTFIGQQFGWRVAFW IVAAFGVMSLAGVTALVPNRHDTGPAGLGHEVRVLKEPQVWLALTMTVLGFGGVFVVFTYIAPILEQVGGFTPHGVTLIL VLFGVGLTVGNTVGGKLADRSLMPSLMGILIALAVVMAVFAHTSHSQVAAAVTVFIWGIAAFATVPPLQMRVVEKAKAAP NLASTLNIGAFNVGNAGGAWLGGLAISHGYGLDALPYVAAVVALAALGLTWIAARLDAPAAIATRKMRERV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1787947, Length=373, Percent_Identity=50.402144772118, Blast_Score=323, Evalue=1e-89, Organism=Escherichia coli, GI1786595, Length=386, Percent_Identity=34.9740932642487, Blast_Score=232, Evalue=4e-62, Organism=Escherichia coli, GI1787808, Length=364, Percent_Identity=31.043956043956, Blast_Score=139, Evalue=4e-34, Organism=Escherichia coli, GI145693198, Length=333, Percent_Identity=28.2282282282282, Blast_Score=117, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 40356; Mature: 40225
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIPLLALAISAFAIGTTEFVIMGLLPEVAKDLAVSLPSAGLLVSGYALGVAVGAPLLAV CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VTSRMPRKLALQLLMGVFIVGNLLCAIASDYSVLMIARVVTSFAHGSFFGIGAVVAASLV HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC PQEKRASAIALMFTGLTLANVLGVPFGTFIGQQFGWRVAFWIVAAFGVMSLAGVTALVPN CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RHDTGPAGLGHEVRVLKEPQVWLALTMTVLGFGGVFVVFTYIAPILEQVGGFTPHGVTLI CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LVLFGVGLTVGNTVGGKLADRSLMPSLMGILIALAVVMAVFAHTSHSQVAAAVTVFIWGI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AAFATVPPLQMRVVEKAKAAPNLASTLNIGAFNVGNAGGAWLGGLAISHGYGLDALPYVA HHHHHCCHHHHHHHHHHHCCCCHHHHCCCCCEECCCCCCHHHHHHHHHCCCCCCHHHHHH AVVALAALGLTWIAARLDAPAAIATRKMRERV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC >Mature Secondary Structure PIPLLALAISAFAIGTTEFVIMGLLPEVAKDLAVSLPSAGLLVSGYALGVAVGAPLLAV CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH VTSRMPRKLALQLLMGVFIVGNLLCAIASDYSVLMIARVVTSFAHGSFFGIGAVVAASLV HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC PQEKRASAIALMFTGLTLANVLGVPFGTFIGQQFGWRVAFWIVAAFGVMSLAGVTALVPN CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RHDTGPAGLGHEVRVLKEPQVWLALTMTVLGFGGVFVVFTYIAPILEQVGGFTPHGVTLI CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LVLFGVGLTVGNTVGGKLADRSLMPSLMGILIALAVVMAVFAHTSHSQVAAAVTVFIWGI HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH AAFATVPPLQMRVVEKAKAAPNLASTLNIGAFNVGNAGGAWLGGLAISHGYGLDALPYVA HHHHHCCHHHHHHHHHHHCCCCHHHHCCCCCEECCCCCCHHHHHHHHHCCCCCCHHHHHH AVVALAALGLTWIAARLDAPAAIATRKMRERV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]