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The map label for this gene is rci [H]

Identifier: 186475011

GI number: 186475011

Start: 279867

End: 280988

Strand: Direct

Name: rci [H]

Synonym: Bphy_0242

Alternate gene names: 186475011

Gene position: 279867-280988 (Clockwise)

Preceding gene: 186475006

Following gene: 186475012

Centisome position: 8.04

GC content: 58.82

Gene sequence:

>1122_bases
ATGGCGTCCATTACCGAACGAGGACCATATCAGTGGCGTGCCCAGGTGCGACGCCGGGGGCACGCGTCTCAAAGCAAGAC
GTTTGCTACGAAAGCTGAAGCTGAATCTTGGGCCAACATGATTGAGTCCGAGATGGCTTGGGGCGCATGGGTCAGCCGAG
GTAAGGCGAAGACCGCCACACTCTGTCAAGCCTTGAGGCGCTACGAGACGGAAATATCGCGCAGGAAAAGAGGTTCAGTC
CAAGAAGCGTCCGTTCTCAAAATCTGGATGGAGACGGCACTGGCCAAGTGTCCACTGGTCGCGATCCGCACTTTGGACAT
AGCTAAACTGCGAGACGAGTGGCTGGAGGCCTACAAGCCTGCCACTGTCCTGCGGCGATTGGCCGTGTTGTCGCATGTGT
TCAGTGTGGCTCGTAAGGAATGGGGAATGGAAAGCCTACCCAACCCGGTGGAACTGGTGCGCAAGCCGGAACCGGGCGAT
ACCCGTACTCGACGCTTGGTTGCGGAGGTACATCTCGAGACGGCTGAACGCGTCCGTAACCCCGATCGACGGGCACAAGA
TGGAGAACTCGACCGGGTCGTAGCAGCCAGCGAATCCGCACTCTTGCCGCCGATTGTCTGGCTGGCAGTCGAAACCGCGC
TGCGTCGCGGCGAAATCGTGTCGTTGACCTGGGAGTATGTGGACCTACCGCATAGGGTGATTCATTTGCCGGCGACCGGA
AACGGCACCGCTCGCGATGTGCCGCTTTCGTCACGTGCAATTGCCATCCTTCGATCCATGAAAGATCGCGGTCGCGCTAA
GAAATCTGCCCCTCGTGACGGGGCGGAACGAAGCAACTTCATCTTTGACATCCGGGGCGATGCGATAACCCGAGCGTTCG
AGCGGGCGGTGGCAAGGGCACGGAAGATCTACGAGGACGAATGCCGTATGGCCCGTGGGACGCCAGACGAGCGGTTCCTG
GTCGATCTTCGCTTTCAAGACCTGCGTCACGAAGCGGCGTGCCGGCTAGCAACGATATTCCCTCTGCACGAGTTGGCGAG
GATCACCGGCCATAAGGATCTGCGTATGTTGACGCGCTACTATCCTCAACAGGAGGAAGATTGGGCGCATAGACTTGCAT
GA

Upstream 100 bases:

>100_bases
GGGTACATGGGTTCGTTCCCTCATGTCAGCCTCCTTTCAGGCGTCATGCCGTTTAATGCACAATATCGGCACCTGTAGTC
CAAGACAACTCTCCAGTGCG

Downstream 100 bases:

>100_bases
CACTCGGCGGCGAGGTGTGACACACCCAATGGCATGTGGAGCGTCAAAGTCGTCGCTGGAGCGCGTGCACATGTTCAGTC
ACTGCCGGCCGGCTCACGAG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MASITERGPYQWRAQVRRRGHASQSKTFATKAEAESWANMIESEMAWGAWVSRGKAKTATLCQALRRYETEISRRKRGSV
QEASVLKIWMETALAKCPLVAIRTLDIAKLRDEWLEAYKPATVLRRLAVLSHVFSVARKEWGMESLPNPVELVRKPEPGD
TRTRRLVAEVHLETAERVRNPDRRAQDGELDRVVAASESALLPPIVWLAVETALRRGEIVSLTWEYVDLPHRVIHLPATG
NGTARDVPLSSRAIAILRSMKDRGRAKKSAPRDGAERSNFIFDIRGDAITRAFERAVARARKIYEDECRMARGTPDERFL
VDLRFQDLRHEAACRLATIFPLHELARITGHKDLRMLTRYYPQQEEDWAHRLA

Sequences:

>Translated_373_residues
MASITERGPYQWRAQVRRRGHASQSKTFATKAEAESWANMIESEMAWGAWVSRGKAKTATLCQALRRYETEISRRKRGSV
QEASVLKIWMETALAKCPLVAIRTLDIAKLRDEWLEAYKPATVLRRLAVLSHVFSVARKEWGMESLPNPVELVRKPEPGD
TRTRRLVAEVHLETAERVRNPDRRAQDGELDRVVAASESALLPPIVWLAVETALRRGEIVSLTWEYVDLPHRVIHLPATG
NGTARDVPLSSRAIAILRSMKDRGRAKKSAPRDGAERSNFIFDIRGDAITRAFERAVARARKIYEDECRMARGTPDERFL
VDLRFQDLRHEAACRLATIFPLHELARITGHKDLRMLTRYYPQQEEDWAHRLA
>Mature_372_residues
ASITERGPYQWRAQVRRRGHASQSKTFATKAEAESWANMIESEMAWGAWVSRGKAKTATLCQALRRYETEISRRKRGSVQ
EASVLKIWMETALAKCPLVAIRTLDIAKLRDEWLEAYKPATVLRRLAVLSHVFSVARKEWGMESLPNPVELVRKPEPGDT
RTRRLVAEVHLETAERVRNPDRRAQDGELDRVVAASESALLPPIVWLAVETALRRGEIVSLTWEYVDLPHRVIHLPATGN
GTARDVPLSSRAIAILRSMKDRGRAKKSAPRDGAERSNFIFDIRGDAITRAFERAVARARKIYEDECRMARGTPDERFLV
DLRFQDLRHEAACRLATIFPLHELARITGHKDLRMLTRYYPQQEEDWAHRLA

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42674; Mature: 42543

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASITERGPYQWRAQVRRRGHASQSKTFATKAEAESWANMIESEMAWGAWVSRGKAKTAT
CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LCQALRRYETEISRRKRGSVQEASVLKIWMETALAKCPLVAIRTLDIAKLRDEWLEAYKP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCH
ATVLRRLAVLSHVFSVARKEWGMESLPNPVELVRKPEPGDTRTRRLVAEVHLETAERVRN
HHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDRRAQDGELDRVVAASESALLPPIVWLAVETALRRGEIVSLTWEYVDLPHRVIHLPATG
CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCEEEEECCCC
NGTARDVPLSSRAIAILRSMKDRGRAKKSAPRDGAERSNFIFDIRGDAITRAFERAVARA
CCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
RKIYEDECRMARGTPDERFLVDLRFQDLRHEAACRLATIFPLHELARITGHKDLRMLTRY
HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YPQQEEDWAHRLA
CCCCCHHHHHHCC
>Mature Secondary Structure 
ASITERGPYQWRAQVRRRGHASQSKTFATKAEAESWANMIESEMAWGAWVSRGKAKTAT
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LCQALRRYETEISRRKRGSVQEASVLKIWMETALAKCPLVAIRTLDIAKLRDEWLEAYKP
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCH
ATVLRRLAVLSHVFSVARKEWGMESLPNPVELVRKPEPGDTRTRRLVAEVHLETAERVRN
HHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDRRAQDGELDRVVAASESALLPPIVWLAVETALRRGEIVSLTWEYVDLPHRVIHLPATG
CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCEEEEECCCC
NGTARDVPLSSRAIAILRSMKDRGRAKKSAPRDGAERSNFIFDIRGDAITRAFERAVARA
CCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
RKIYEDECRMARGTPDERFLVDLRFQDLRHEAACRLATIFPLHELARITGHKDLRMLTRY
HHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
YPQQEEDWAHRLA
CCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]