| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is yxxF [H]
Identifier: 186474929
GI number: 186474929
Start: 181042
End: 181941
Strand: Direct
Name: yxxF [H]
Synonym: Bphy_0160
Alternate gene names: 186474929
Gene position: 181042-181941 (Clockwise)
Preceding gene: 186474927
Following gene: 186474936
Centisome position: 5.2
GC content: 63.0
Gene sequence:
>900_bases ATGACGACAGGTAATGAAGTGCGGCAAGGCGCGTTCGAGATGACGCTCGCGATGCTGATGTCGGGAACGATCGGCTGGCT GGTTGTTTCTTCGCAGCAATCAGCGCTCAACGTCGCCTTCTTCCGATGCCTGTTCGGCGGCGCAACCTTGCTGCTGATTT GCGCGGCGCGCGGGCTGCTCGCACGCAAGCTGTTCTCGTGGAAGATGATCGCGCTCGCGACGCTCGGCAGCGCGGCCATC GTCGCGAACTGGGTGTTGCTGTTCGCCGCTTACTCGCGCGCGTCGATATCGATGGCGACGACGGTCTACAGCACGCAGCC GTTCATGCTCGTCGCGCTGGGGGCGCTGGTGTTTCGCGAACGCGTGACGGCGTCGACGGTCGTGTGGCTGCTGATCGCGT TCATCGGCCTCGTGTTCGTCGTGAAAGTCGAGCCGGCTGTGCTGGCTGTGCCGGGGCAATATCTGCAGGGCGTGGCATAC GCGGTCGGCGCAGCGTTCCTGTATGCCGTCTCGTCGATCATCACAAAGCACTTGAAGAACACGCCGCCGCACCTTATCGC ACTGATCACCGTGGCGACGGGCGTCGTCGTGCTCGCTCCGTCCGTGCAGTACGATGCGTTGCCATCAACGGGCATGCATT GGCTGCAACTCGTCACGCTCGGTGTCGTGAACACCGGGATCATGTACGTGCTGCTGTATGGCGCGATCCAGAAGCTGCCG ACGGCGATGACGGGCGCACTGTCTTTCATCTATCCGGTCGTGGCCATCATCGTGGACCGCGTCGCCTTCGGCCAAAAGCT CGCGTGGATTCAGGTGCTTGGCGCCGTACTGATCCTTCTCGCGGCGGCGGGCGTGAATCTCGGCTGGCGCATCGTGCCCG CGCGGCGCTACTCGATATAA
Upstream 100 bases:
>100_bases CATTCAAGGCAAACTCGTAGAATCGCCTTATTTTAGCTATGTATCATGGACTTCCGATTAATTACACTGACGTCAGAGGT GATTCTTCGTGGAGACCGCG
Downstream 100 bases:
>100_bases CGGTAGTTCATACCGATAGTACGGATTCCGAATAAGGCATCAGGCCGAACGTTAAAGATTCTGTAGGGAAATCACCGATG CGTTCGAAAGGTGCGCGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MTTGNEVRQGAFEMTLAMLMSGTIGWLVVSSQQSALNVAFFRCLFGGATLLLICAARGLLARKLFSWKMIALATLGSAAI VANWVLLFAAYSRASISMATTVYSTQPFMLVALGALVFRERVTASTVVWLLIAFIGLVFVVKVEPAVLAVPGQYLQGVAY AVGAAFLYAVSSIITKHLKNTPPHLIALITVATGVVVLAPSVQYDALPSTGMHWLQLVTLGVVNTGIMYVLLYGAIQKLP TAMTGALSFIYPVVAIIVDRVAFGQKLAWIQVLGAVLILLAAAGVNLGWRIVPARRYSI
Sequences:
>Translated_299_residues MTTGNEVRQGAFEMTLAMLMSGTIGWLVVSSQQSALNVAFFRCLFGGATLLLICAARGLLARKLFSWKMIALATLGSAAI VANWVLLFAAYSRASISMATTVYSTQPFMLVALGALVFRERVTASTVVWLLIAFIGLVFVVKVEPAVLAVPGQYLQGVAY AVGAAFLYAVSSIITKHLKNTPPHLIALITVATGVVVLAPSVQYDALPSTGMHWLQLVTLGVVNTGIMYVLLYGAIQKLP TAMTGALSFIYPVVAIIVDRVAFGQKLAWIQVLGAVLILLAAAGVNLGWRIVPARRYSI >Mature_298_residues TTGNEVRQGAFEMTLAMLMSGTIGWLVVSSQQSALNVAFFRCLFGGATLLLICAARGLLARKLFSWKMIALATLGSAAIV ANWVLLFAAYSRASISMATTVYSTQPFMLVALGALVFRERVTASTVVWLLIAFIGLVFVVKVEPAVLAVPGQYLQGVAYA VGAAFLYAVSSIITKHLKNTPPHLIALITVATGVVVLAPSVQYDALPSTGMHWLQLVTLGVVNTGIMYVLLYGAIQKLPT AMTGALSFIYPVVAIIVDRVAFGQKLAWIQVLGAVLILLAAAGVNLGWRIVPARRYSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31878; Mature: 31747
Theoretical pI: Translated: 10.43; Mature: 10.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGNEVRQGAFEMTLAMLMSGTIGWLVVSSQQSALNVAFFRCLFGGATLLLICAARGLL CCCCHHHHHHHHHHHHHHHHCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKLFSWKMIALATLGSAAIVANWVLLFAAYSRASISMATTVYSTQPFMLVALGALVFRE HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RVTASTVVWLLIAFIGLVFVVKVEPAVLAVPGQYLQGVAYAVGAAFLYAVSSIITKHLKN HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPPHLIALITVATGVVVLAPSVQYDALPSTGMHWLQLVTLGVVNTGIMYVLLYGAIQKLP CCHHHHHHHHHHHCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAMTGALSFIYPVVAIIVDRVAFGQKLAWIQVLGAVLILLAAAGVNLGWRIVPARRYSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC >Mature Secondary Structure TTGNEVRQGAFEMTLAMLMSGTIGWLVVSSQQSALNVAFFRCLFGGATLLLICAARGLL CCCHHHHHHHHHHHHHHHHCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKLFSWKMIALATLGSAAIVANWVLLFAAYSRASISMATTVYSTQPFMLVALGALVFRE HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RVTASTVVWLLIAFIGLVFVVKVEPAVLAVPGQYLQGVAYAVGAAFLYAVSSIITKHLKN HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPPHLIALITVATGVVVLAPSVQYDALPSTGMHWLQLVTLGVVNTGIMYVLLYGAIQKLP CCHHHHHHHHHHHCHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TAMTGALSFIYPVVAIIVDRVAFGQKLAWIQVLGAVLILLAAAGVNLGWRIVPARRYSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7704263; 9384377; 8316082 [H]