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The map label for this gene is ntrY [H]

Identifier: 186474812

GI number: 186474812

Start: 47612

End: 50023

Strand: Direct

Name: ntrY [H]

Synonym: Bphy_0041

Alternate gene names: 186474812

Gene position: 47612-50023 (Clockwise)

Preceding gene: 186474811

Following gene: 186474813

Centisome position: 1.37

GC content: 62.56

Gene sequence:

>2412_bases
GTGCGCCGGGCCACCAGCGCCGGCAGTCTCGTCGTCAGGCTGCTCGTATCGACGGTGGCCGTCACAGCTGTCCTGCTGCT
CGTGCTGCTCGCGGCCGCGAGCGCGAACACCGAGTTCTTCGATCGCTACTACGGCTGGCTCTATGCCGCCAACGTCGCGG
TCGCGCTGATCTTCATGCTGATAGTCGCGGTGCTGGTGGTGATTATCGTCACGCGATTGCGCAAGGGCAAGTTCGGGACG
CGGCTGCTCGCGAAGCTCGCGTTCTTCTTCGCGCTCGTCGGCGTGGTGCCGGGCGGCATCATCTACATCGTGTCGTATCA
GTTCGTGTCGCGCAGTATTGAATCCTGGTTCGATGTGAATGTCGAAACGGCGCTCACGTCGGGCCTGAATCTCGGACGCG
GGATGCTCGACGCGTCGCTGTCGGATCTGCAAACCAAGGGCCGTCTGATGGCCGAACAGCTCGCGAGCGCCGATTCCGCG
GGCACGACGCTCACGCTCTTGCGTCTGCGCGACCAGTTCGGTGTGCAGGACGCGACGATCGTCGAGCCGTCGCGCAGTAT
TTCGGGCGCTACACCCGACATGCACGTCGTCGCGCAGGCGACCAGTAATTACGCGTCGCTCGTGCCGGGCGACTTGCCCA
CGTCGATCATGATCGAGCAGGCGCGCGGACGCGGCTTCGCCTCGATCGAAGGCGAAGTGGATGGCGATCCGAAAGCACGC
GGCGCGAAGGGTGCTTTGCGGCTGCGCATCGTGCAGCGCATTCCCGACGCCAACGCGTCGCAGCTACAACCGACCGAGCG
CTTCCTGCAGCTCACGCAGCCCGTGTCGCAATCGCTGGCGCGCAACGCGGATGCAGTGCAGCGCGCGTATCGCGAGTATC
AGGAGAAAGCGATCGGACGCACGGGCTTGCGCAAGATGTACATCGGCACGCTGACGCTCGCGCTGTTCCTCGCCACCTTC
ATCGCCATGATGCTCGCGCTCGCGCTCGGCAATCAACTTGCGCGGCCGCTGTTCCTGCTCGCTCAGGGCACCAAGGAAGT
GACGGAGGGCGATTACACGCCGAAGCGTGAGATCAAGTCGCGCGACGAACTCGGCTTCCTCACGCAGTCGTTCAACGCAA
TGACGCGCCAGTTGTCGGAAGCGCGCCTCGCTGTCGAGGCGAACCGCATCGCGCTCGAACATTCGAAGTCGTATCTCGAA
AGCATTCTGGCGAATCTGACAGCAGGCGTGTTCGTGTTCGACCGGCAGTTCCGTCTCACCACCGCGAATCGCGGTGCCGA
ACGCATCTTCCGTCAGCCGTTCGTGTCGCTGCTCGGTTCTCCGCTGGATCGCATCGGCGTGTTGAGCGAATTTGGCCCGA
TGGTGCGCAAGGCTTTTGCGGACCTCGAAGCAGCAGGCGGCAACGATCAGGGCGACACCGGGCACTGGCAGCAGCAGATG
GCGCTCCAGGTGCCGGGCGAAGCCGATCCGCTGACGCTGCTCGCGCGCGGCGCGCGGCTCGTGTCCGCGGCAGGCAACGA
TAGCGACGACGAAGAGACGTCTGGCTATGTCGTCGTGTTCGACGATATCTCCGACGTCATTTCTGCTCAGCGTTCCATTG
CATGGGGCGAAGTCGCGCGGCGTCTCGCGCACGAGATCAAGAATCCGCTCACGCCGATCCAGCTTTCCGCCGAGCGTCTG
CAGATGAAGCTCGCCGACAAGCTCATGCCGTCGGATGCCGAAGTGTTGAAACGCGGTGCCACTACAATCGTGAATCAGGT
CGCCGCGATGAAGCAGATGGTCGACGACTTTCGCGACTATGCACGCACGCCGCCGGCCGTGCTCGCGAATCTGCAGCTGA
ACGAACTCGTCAGCGAAGTGCTGACGCTGTATGGGATCGAAGAAGGCAAGAGCGCGATTGTCGTCGAAATGGCGGACTTG
CCCGTTATACGAGGTGACGCGACGCAATTGCGTCAGGTGATCCATAACCTGCTGCAGAACGCACAGGATGCCGTGGCCGA
TGTCCAGCACCCGCGTGTGTTGCTCGAGACGAGGACAGTAGAATATGGCGATCCCGACGCAGACGGCAAAGTGAGCGTCG
CGGTGCGATTGACCGTGTCGGACAACGGTCCGGGCTTCCCCGCGCGCATCCTCACTCGCGCGTTCGAACCTTACGTGACG
ACCAAGGCCAAAGGTACAGGTCTCGGACTCGCCATGGTCAAGAAGATCGTCGATGAACACGGCGCGCGAATCGACATTCG
CAATCGTCTAAAAGCGGGCGATGTGATCGAAGGTGCGCAGATTTCTATACTCTTTCTTCAACTCGCAGACGACAAGGCTG
CGGCGCCCGGAAGCGGGCCGCAGGCGGCGCATGACAGCAGCGGCACGTCGCAGGGAAAGACAAAAGCAACAGTGCAGACA
AGGGCAGCTTAA

Upstream 100 bases:

>100_bases
CCCAAGCCCTTCCAGATCGATGCGGTCAACAACCGCGACTGGAATCTTGCTTCCGACTGGAAGCGTTTTACCTTTACGGT
GACCGAACGTGCTAAATAAA

Downstream 100 bases:

>100_bases
ATGGCAACCATCCTGGTGGTAGATGATGAAATGGGCATCCGGGAATTGCTCTCGGAGATCCTGAGCGACGAAGGGCATGT
CGTGGAGGTCGCGGAGAACG

Product: integral membrane sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 803; Mature: 803

Protein sequence:

>803_residues
MRRATSAGSLVVRLLVSTVAVTAVLLLVLLAAASANTEFFDRYYGWLYAANVAVALIFMLIVAVLVVIIVTRLRKGKFGT
RLLAKLAFFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTSGLNLGRGMLDASLSDLQTKGRLMAEQLASADSA
GTTLTLLRLRDQFGVQDATIVEPSRSISGATPDMHVVAQATSNYASLVPGDLPTSIMIEQARGRGFASIEGEVDGDPKAR
GAKGALRLRIVQRIPDANASQLQPTERFLQLTQPVSQSLARNADAVQRAYREYQEKAIGRTGLRKMYIGTLTLALFLATF
IAMMLALALGNQLARPLFLLAQGTKEVTEGDYTPKREIKSRDELGFLTQSFNAMTRQLSEARLAVEANRIALEHSKSYLE
SILANLTAGVFVFDRQFRLTTANRGAERIFRQPFVSLLGSPLDRIGVLSEFGPMVRKAFADLEAAGGNDQGDTGHWQQQM
ALQVPGEADPLTLLARGARLVSAAGNDSDDEETSGYVVVFDDISDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERL
QMKLADKLMPSDAEVLKRGATTIVNQVAAMKQMVDDFRDYARTPPAVLANLQLNELVSEVLTLYGIEEGKSAIVVEMADL
PVIRGDATQLRQVIHNLLQNAQDAVADVQHPRVLLETRTVEYGDPDADGKVSVAVRLTVSDNGPGFPARILTRAFEPYVT
TKAKGTGLGLAMVKKIVDEHGARIDIRNRLKAGDVIEGAQISILFLQLADDKAAAPGSGPQAAHDSSGTSQGKTKATVQT
RAA

Sequences:

>Translated_803_residues
MRRATSAGSLVVRLLVSTVAVTAVLLLVLLAAASANTEFFDRYYGWLYAANVAVALIFMLIVAVLVVIIVTRLRKGKFGT
RLLAKLAFFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTSGLNLGRGMLDASLSDLQTKGRLMAEQLASADSA
GTTLTLLRLRDQFGVQDATIVEPSRSISGATPDMHVVAQATSNYASLVPGDLPTSIMIEQARGRGFASIEGEVDGDPKAR
GAKGALRLRIVQRIPDANASQLQPTERFLQLTQPVSQSLARNADAVQRAYREYQEKAIGRTGLRKMYIGTLTLALFLATF
IAMMLALALGNQLARPLFLLAQGTKEVTEGDYTPKREIKSRDELGFLTQSFNAMTRQLSEARLAVEANRIALEHSKSYLE
SILANLTAGVFVFDRQFRLTTANRGAERIFRQPFVSLLGSPLDRIGVLSEFGPMVRKAFADLEAAGGNDQGDTGHWQQQM
ALQVPGEADPLTLLARGARLVSAAGNDSDDEETSGYVVVFDDISDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERL
QMKLADKLMPSDAEVLKRGATTIVNQVAAMKQMVDDFRDYARTPPAVLANLQLNELVSEVLTLYGIEEGKSAIVVEMADL
PVIRGDATQLRQVIHNLLQNAQDAVADVQHPRVLLETRTVEYGDPDADGKVSVAVRLTVSDNGPGFPARILTRAFEPYVT
TKAKGTGLGLAMVKKIVDEHGARIDIRNRLKAGDVIEGAQISILFLQLADDKAAAPGSGPQAAHDSSGTSQGKTKATVQT
RAA
>Mature_803_residues
MRRATSAGSLVVRLLVSTVAVTAVLLLVLLAAASANTEFFDRYYGWLYAANVAVALIFMLIVAVLVVIIVTRLRKGKFGT
RLLAKLAFFFALVGVVPGGIIYIVSYQFVSRSIESWFDVNVETALTSGLNLGRGMLDASLSDLQTKGRLMAEQLASADSA
GTTLTLLRLRDQFGVQDATIVEPSRSISGATPDMHVVAQATSNYASLVPGDLPTSIMIEQARGRGFASIEGEVDGDPKAR
GAKGALRLRIVQRIPDANASQLQPTERFLQLTQPVSQSLARNADAVQRAYREYQEKAIGRTGLRKMYIGTLTLALFLATF
IAMMLALALGNQLARPLFLLAQGTKEVTEGDYTPKREIKSRDELGFLTQSFNAMTRQLSEARLAVEANRIALEHSKSYLE
SILANLTAGVFVFDRQFRLTTANRGAERIFRQPFVSLLGSPLDRIGVLSEFGPMVRKAFADLEAAGGNDQGDTGHWQQQM
ALQVPGEADPLTLLARGARLVSAAGNDSDDEETSGYVVVFDDISDVISAQRSIAWGEVARRLAHEIKNPLTPIQLSAERL
QMKLADKLMPSDAEVLKRGATTIVNQVAAMKQMVDDFRDYARTPPAVLANLQLNELVSEVLTLYGIEEGKSAIVVEMADL
PVIRGDATQLRQVIHNLLQNAQDAVADVQHPRVLLETRTVEYGDPDADGKVSVAVRLTVSDNGPGFPARILTRAFEPYVT
TKAKGTGLGLAMVKKIVDEHGARIDIRNRLKAGDVIEGAQISILFLQLADDKAAAPGSGPQAAHDSSGTSQGKTKATVQT
RAA

Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]

COG id: COG5000

COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=418, Percent_Identity=26.0765550239234, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1790300, Length=354, Percent_Identity=26.271186440678, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=30, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003660
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR017232 [H]

Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 86800; Mature: 86800

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRATSAGSLVVRLLVSTVAVTAVLLLVLLAAASANTEFFDRYYGWLYAANVAVALIFML
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVAVLVVIIVTRLRKGKFGTRLLAKLAFFFALVGVVPGGIIYIVSYQFVSRSIESWFDVN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC
VETALTSGLNLGRGMLDASLSDLQTKGRLMAEQLASADSAGTTLTLLRLRDQFGVQDATI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCEE
VEPSRSISGATPDMHVVAQATSNYASLVPGDLPTSIMIEQARGRGFASIEGEVDGDPKAR
ECCCCCCCCCCCCCEEEEHHHCCHHHCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCC
GAKGALRLRIVQRIPDANASQLQPTERFLQLTQPVSQSLARNADAVQRAYREYQEKAIGR
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TGLRKMYIGTLTLALFLATFIAMMLALALGNQLARPLFLLAQGTKEVTEGDYTPKREIKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHCC
RDELGFLTQSFNAMTRQLSEARLAVEANRIALEHSKSYLESILANLTAGVFVFDRQFRLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEE
TANRGAERIFRQPFVSLLGSPLDRIGVLSEFGPMVRKAFADLEAAGGNDQGDTGHWQQQM
ECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ALQVPGEADPLTLLARGARLVSAAGNDSDDEETSGYVVVFDDISDVISAQRSIAWGEVAR
HEECCCCCCHHHHHHHCHHHEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RLAHEIKNPLTPIQLSAERLQMKLADKLMPSDAEVLKRGATTIVNQVAAMKQMVDDFRDY
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTPPAVLANLQLNELVSEVLTLYGIEEGKSAIVVEMADLPVIRGDATQLRQVIHNLLQN
HCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHH
AQDAVADVQHPRVLLETRTVEYGDPDADGKVSVAVRLTVSDNGPGFPARILTRAFEPYVT
HHHHHHHCCCCEEEEEECEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCEE
TKAKGTGLGLAMVKKIVDEHGARIDIRNRLKAGDVIEGAQISILFLQLADDKAAAPGSGP
CCCCCCCHHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
QAAHDSSGTSQGKTKATVQTRAA
CCCCCCCCCCCCCCEECEEECCC
>Mature Secondary Structure
MRRATSAGSLVVRLLVSTVAVTAVLLLVLLAAASANTEFFDRYYGWLYAANVAVALIFML
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVAVLVVIIVTRLRKGKFGTRLLAKLAFFFALVGVVPGGIIYIVSYQFVSRSIESWFDVN
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCC
VETALTSGLNLGRGMLDASLSDLQTKGRLMAEQLASADSAGTTLTLLRLRDQFGVQDATI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCEE
VEPSRSISGATPDMHVVAQATSNYASLVPGDLPTSIMIEQARGRGFASIEGEVDGDPKAR
ECCCCCCCCCCCCCEEEEHHHCCHHHCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCC
GAKGALRLRIVQRIPDANASQLQPTERFLQLTQPVSQSLARNADAVQRAYREYQEKAIGR
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
TGLRKMYIGTLTLALFLATFIAMMLALALGNQLARPLFLLAQGTKEVTEGDYTPKREIKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHCC
RDELGFLTQSFNAMTRQLSEARLAVEANRIALEHSKSYLESILANLTAGVFVFDRQFRLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEE
TANRGAERIFRQPFVSLLGSPLDRIGVLSEFGPMVRKAFADLEAAGGNDQGDTGHWQQQM
ECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
ALQVPGEADPLTLLARGARLVSAAGNDSDDEETSGYVVVFDDISDVISAQRSIAWGEVAR
HEECCCCCCHHHHHHHCHHHEECCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH
RLAHEIKNPLTPIQLSAERLQMKLADKLMPSDAEVLKRGATTIVNQVAAMKQMVDDFRDY
HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARTPPAVLANLQLNELVSEVLTLYGIEEGKSAIVVEMADLPVIRGDATQLRQVIHNLLQN
HCCCCHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHHH
AQDAVADVQHPRVLLETRTVEYGDPDADGKVSVAVRLTVSDNGPGFPARILTRAFEPYVT
HHHHHHHCCCCEEEEEECEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCEE
TKAKGTGLGLAMVKKIVDEHGARIDIRNRLKAGDVIEGAQISILFLQLADDKAAAPGSGP
CCCCCCCHHHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
QAAHDSSGTSQGKTKATVQTRAA
CCCCCCCCCCCCCCEECEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]