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The map label for this gene is rpoE [H]

Identifier: 186474790

GI number: 186474790

Start: 20605

End: 21123

Strand: Direct

Name: rpoE [H]

Synonym: Bphy_0018

Alternate gene names: 186474790

Gene position: 20605-21123 (Clockwise)

Preceding gene: 186474789

Following gene: 186474791

Centisome position: 0.59

GC content: 61.27

Gene sequence:

>519_bases
ATGGACATCCGTAACGAGTTGATGGATCACGTTCCGCGATTGCGCCGCTATGCAAGGGCGCTGATCAGCAATCGCGATCT
CGCGGACGACCTCGTACAGGACACGCTCGAGCGCGCGCTCTCGCGCACGAAGATGTTCGAGGCGGGAACCGATCTGCGTG
CGTGGCTTTTCACGATCATGCACAACGTGTTCGTCAATCAGGTGCGCAAGTCGTCTTCGCGTGCGGTGCATGTGTCGGTA
GATGACGAGAGCATCGTCGAAAGCGAATTTGCTGTGTCGGGCGAACAGACGCGCTCGCTCGAAGTGCGCGATCTCGATTA
CGCGTTGCAGCGTCTGCCCGCCGATCAGCGTGAAGTCGTGCTGCTCGTCGGGCTTGAAGAAATGAGTTACGCCGAAGTGG
CGATCGCGCTCGACATTCCCGTCGGCACGGTGATGTCGAGGCTCTCGCGCGGACGCGAGCGTTTGCGCGCGTTGATGGCG
GGCGCGCAGCCCGGCGCGAAACTGAAGGTGGTGCGATGA

Upstream 100 bases:

>100_bases
AAAACAGGCGGAATAAAATGCCACAGGTAGTGTTCTCTGCTTCAGGAGGCAACGCGGGTGGCTGCTTTGCGCGCGGGGCG
ATAATCGATGGGTAGAGCAA

Downstream 100 bases:

>100_bases
GCGATCAACAGACTCCCATTAGCGAAGAGGAAATTCATGCGTACGTGGACGGCACGCTGTCGGACGAGCGCCGTGAGCAG
GTGGAGCGTGCGATCGAACT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MDIRNELMDHVPRLRRYARALISNRDLADDLVQDTLERALSRTKMFEAGTDLRAWLFTIMHNVFVNQVRKSSSRAVHVSV
DDESIVESEFAVSGEQTRSLEVRDLDYALQRLPADQREVVLLVGLEEMSYAEVAIALDIPVGTVMSRLSRGRERLRALMA
GAQPGAKLKVVR

Sequences:

>Translated_172_residues
MDIRNELMDHVPRLRRYARALISNRDLADDLVQDTLERALSRTKMFEAGTDLRAWLFTIMHNVFVNQVRKSSSRAVHVSV
DDESIVESEFAVSGEQTRSLEVRDLDYALQRLPADQREVVLLVGLEEMSYAEVAIALDIPVGTVMSRLSRGRERLRALMA
GAQPGAKLKVVR
>Mature_172_residues
MDIRNELMDHVPRLRRYARALISNRDLADDLVQDTLERALSRTKMFEAGTDLRAWLFTIMHNVFVNQVRKSSSRAVHVSV
DDESIVESEFAVSGEQTRSLEVRDLDYALQRLPADQREVVLLVGLEEMSYAEVAIALDIPVGTVMSRLSRGRERLRALMA
GAQPGAKLKVVR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19479; Mature: 19479

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIRNELMDHVPRLRRYARALISNRDLADDLVQDTLERALSRTKMFEAGTDLRAWLFTIM
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HNVFVNQVRKSSSRAVHVSVDDESIVESEFAVSGEQTRSLEVRDLDYALQRLPADQREVV
HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEE
LLVGLEEMSYAEVAIALDIPVGTVMSRLSRGRERLRALMAGAQPGAKLKVVR
EEEECCHHCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MDIRNELMDHVPRLRRYARALISNRDLADDLVQDTLERALSRTKMFEAGTDLRAWLFTIM
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
HNVFVNQVRKSSSRAVHVSVDDESIVESEFAVSGEQTRSLEVRDLDYALQRLPADQREVV
HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCEE
LLVGLEEMSYAEVAIALDIPVGTVMSRLSRGRERLRALMAGAQPGAKLKVVR
EEEECCHHCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]