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The map label for this gene is yiaD [H]

Identifier: 183222805

GI number: 183222805

Start: 3584579

End: 3585964

Strand: Reverse

Name: yiaD [H]

Synonym: LEPBI_I3466

Alternate gene names: 183222805

Gene position: 3585964-3584579 (Counterclockwise)

Preceding gene: 183222806

Following gene: 183222804

Centisome position: 99.62

GC content: 37.01

Gene sequence:

>1386_bases
GTGGCGTTTAAATCGCAATCTCAGGGGAATAATTCTAATACAATTAACTCCCCGTTCCGCGAGAATAGACAAATTTCATG
GATCCACTCCATGTATCGGAGTCTATCATCTACAATGAAAGTCTTACAATTTGTCCTTAGTTTCCAATTCCTCTGTGTTT
TTTTGAATTTTTCCCTTCTTGCCCAAACAAACGATACCGAAGGATCTTTGTTAGTTGCGCCAATCCAAGGACCAATCAAT
TCAGAATTTCAGGAATTTGGACCAACAATGACACCTGATGCCAAAACATTATACTTCTATTCGAAAAGATCAAATCGAGG
TTATACGGAGATATTCAAATCAAATCGGAAAAGTGACGGTAGCTGGGATTTTCCAGAAGAGGTGAGTGTTTTAAACTCTC
CATTCGATGACCAAAGTCCCTTCATTTCTAGGGATGGAAAAACATTACTCCTTTCTTCCAATAGGGATGGTTCTGTTGAA
GTGAGTTTACCTGATGGAAAGGTTGGGATCTCTAGAGATTTGTACGTTTCCAATTGGAATGGAAAAGATTGGTCGATTCC
AGTAGCCTTGCCATCTGCCATTAATACGGAAGAGATAGAAGAAAATCCACACCTATTAGGGGACACTCTTCTTTTTACAC
GTTATCCATTTGGAAAACCAAATTTAGCAAAAGTATATTATAGCCAATTTAAAAATAACCAATGGACAAAACCTAAACTT
TTGCCATCACCAATTAACGATGATTATGCAACCATTGCAGCAGCTTTTAATGATGATGGAAAGATTCTTTTTTTTGCATC
AAACCGACCTGGCGGTTATGGTGGTTTTGATTTGTATATGGCAAAAATCGAGGGTGAAACCTTTACAAATATAGAAAACC
TTGGATCACCAATTAACTCTCCTGAAGATGAAGCTTATATTGTTTTTCAACAGGTGAAAAAAACATTTTTGTTTTGTCGA
AGAGTAGACGGTAAGTCATTTGATATCTTCACAGCGTCTGTTCCTAAACAAGAAAATTTAGTACAAAAGAAATTAGAGGA
AACTAAAAAAATCTCTCTAGATTCTGTGTATTTTGAAAGAGCGTCTTCCGTATTAAAATCTGAATCCTCTATTCCACTTG
ATTCTATCGTGGACTATTTACACGAAAATTCAGATCAAAAAATGAAAATCATAGGTCATACTGATTTAACGGGTACATAC
GATGATAATATGGTTTTATCAAAAGAAAGGGCGGAATCCGTTAAACAGTATTTAGTCTCCAAAGGAGTGGATCCCAACCG
ATTGGTAACGGAAGGAAAAGGTCCAACCCAACCTATGGTCCAGGGGACAGATGAGGCTTCGTCTAAAAAAAATCGGCGAA
CTGAATTTGTCCTATTGAATCCATAA

Upstream 100 bases:

>100_bases
TAACACGCAAGCTGAAAGGTATAAATGTATGAGTATTATATCAAAGAAGATTGCGATTATTTGTGATAGATTTAATTCCC
GAGCTGGAGGGAATAATTGC

Downstream 100 bases:

>100_bases
TTTTTCCTTGCCGATTCTATTTCGGAAAAGAAGGTTAATTGGATGTCCCCTCTTTACCGTAAGTTCATTTGGGCTTTTGT
CAGTTTCACACTATTTGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MAFKSQSQGNNSNTINSPFRENRQISWIHSMYRSLSSTMKVLQFVLSFQFLCVFLNFSLLAQTNDTEGSLLVAPIQGPIN
SEFQEFGPTMTPDAKTLYFYSKRSNRGYTEIFKSNRKSDGSWDFPEEVSVLNSPFDDQSPFISRDGKTLLLSSNRDGSVE
VSLPDGKVGISRDLYVSNWNGKDWSIPVALPSAINTEEIEENPHLLGDTLLFTRYPFGKPNLAKVYYSQFKNNQWTKPKL
LPSPINDDYATIAAAFNDDGKILFFASNRPGGYGGFDLYMAKIEGETFTNIENLGSPINSPEDEAYIVFQQVKKTFLFCR
RVDGKSFDIFTASVPKQENLVQKKLEETKKISLDSVYFERASSVLKSESSIPLDSIVDYLHENSDQKMKIIGHTDLTGTY
DDNMVLSKERAESVKQYLVSKGVDPNRLVTEGKGPTQPMVQGTDEASSKKNRRTEFVLLNP

Sequences:

>Translated_461_residues
MAFKSQSQGNNSNTINSPFRENRQISWIHSMYRSLSSTMKVLQFVLSFQFLCVFLNFSLLAQTNDTEGSLLVAPIQGPIN
SEFQEFGPTMTPDAKTLYFYSKRSNRGYTEIFKSNRKSDGSWDFPEEVSVLNSPFDDQSPFISRDGKTLLLSSNRDGSVE
VSLPDGKVGISRDLYVSNWNGKDWSIPVALPSAINTEEIEENPHLLGDTLLFTRYPFGKPNLAKVYYSQFKNNQWTKPKL
LPSPINDDYATIAAAFNDDGKILFFASNRPGGYGGFDLYMAKIEGETFTNIENLGSPINSPEDEAYIVFQQVKKTFLFCR
RVDGKSFDIFTASVPKQENLVQKKLEETKKISLDSVYFERASSVLKSESSIPLDSIVDYLHENSDQKMKIIGHTDLTGTY
DDNMVLSKERAESVKQYLVSKGVDPNRLVTEGKGPTQPMVQGTDEASSKKNRRTEFVLLNP
>Mature_460_residues
AFKSQSQGNNSNTINSPFRENRQISWIHSMYRSLSSTMKVLQFVLSFQFLCVFLNFSLLAQTNDTEGSLLVAPIQGPINS
EFQEFGPTMTPDAKTLYFYSKRSNRGYTEIFKSNRKSDGSWDFPEEVSVLNSPFDDQSPFISRDGKTLLLSSNRDGSVEV
SLPDGKVGISRDLYVSNWNGKDWSIPVALPSAINTEEIEENPHLLGDTLLFTRYPFGKPNLAKVYYSQFKNNQWTKPKLL
PSPINDDYATIAAAFNDDGKILFFASNRPGGYGGFDLYMAKIEGETFTNIENLGSPINSPEDEAYIVFQQVKKTFLFCRR
VDGKSFDIFTASVPKQENLVQKKLEETKKISLDSVYFERASSVLKSESSIPLDSIVDYLHENSDQKMKIIGHTDLTGTYD
DNMVLSKERAESVKQYLVSKGVDPNRLVTEGKGPTQPMVQGTDEASSKKNRRTEFVLLNP

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=36.1904761904762, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=36.2745098039216, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 51932; Mature: 51801

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKSQSQGNNSNTINSPFRENRQISWIHSMYRSLSSTMKVLQFVLSFQFLCVFLNFSLL
CCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
AQTNDTEGSLLVAPIQGPINSEFQEFGPTMTPDAKTLYFYSKRSNRGYTEIFKSNRKSDG
EECCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCC
SWDFPEEVSVLNSPFDDQSPFISRDGKTLLLSSNRDGSVEVSLPDGKVGISRDLYVSNWN
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCC
GKDWSIPVALPSAINTEEIEENPHLLGDTLLFTRYPFGKPNLAKVYYSQFKNNQWTKPKL
CCCEEEEEECCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCC
LPSPINDDYATIAAAFNDDGKILFFASNRPGGYGGFDLYMAKIEGETFTNIENLGSPINS
CCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCC
PEDEAYIVFQQVKKTFLFCRRVDGKSFDIFTASVPKQENLVQKKLEETKKISLDSVYFER
CCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHH
ASSVLKSESSIPLDSIVDYLHENSDQKMKIIGHTDLTGTYDDNMVLSKERAESVKQYLVS
HHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHH
KGVDPNRLVTEGKGPTQPMVQGTDEASSKKNRRTEFVLLNP
CCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEECC
>Mature Secondary Structure 
AFKSQSQGNNSNTINSPFRENRQISWIHSMYRSLSSTMKVLQFVLSFQFLCVFLNFSLL
CCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
AQTNDTEGSLLVAPIQGPINSEFQEFGPTMTPDAKTLYFYSKRSNRGYTEIFKSNRKSDG
EECCCCCCCEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHCCCCCCC
SWDFPEEVSVLNSPFDDQSPFISRDGKTLLLSSNRDGSVEVSLPDGKVGISRDLYVSNWN
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCC
GKDWSIPVALPSAINTEEIEENPHLLGDTLLFTRYPFGKPNLAKVYYSQFKNNQWTKPKL
CCCEEEEEECCCCCCHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCC
LPSPINDDYATIAAAFNDDGKILFFASNRPGGYGGFDLYMAKIEGETFTNIENLGSPINS
CCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCC
PEDEAYIVFQQVKKTFLFCRRVDGKSFDIFTASVPKQENLVQKKLEETKKISLDSVYFER
CCCCEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHH
ASSVLKSESSIPLDSIVDYLHENSDQKMKIIGHTDLTGTYDDNMVLSKERAESVKQYLVS
HHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHH
KGVDPNRLVTEGKGPTQPMVQGTDEASSKKNRRTEFVLLNP
CCCCCCCEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]