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The map label for this gene is ydeB [H]

Identifier: 183222034

GI number: 183222034

Start: 2773207

End: 2773788

Strand: Reverse

Name: ydeB [H]

Synonym: LEPBI_I2676

Alternate gene names: 183222034

Gene position: 2773788-2773207 (Counterclockwise)

Preceding gene: 183222035

Following gene: 183222033

Centisome position: 77.06

GC content: 40.55

Gene sequence:

>582_bases
TTGGCTACAAAAAAACTAAACGAAAAAACTAAAGAGCCTAAATTCAAGGTTGGGGACTACGTTGTATACCCGATCCATGG
AGTAGGTGAAGTCACAGAAGTTGCAAAAAAGCTGATTCTGGGTAAGAAGAAAGACTGTTACAGTTTGGAAATTCAAGGTT
CCAAAATGAAGGTCTCTATCCCAGTTGATCGTGCAATGGATGTGGGTATCCGATCGATCATTGATAAAAAAGAGATCAAA
AAAGTTCTCACTCTCCTAAAAAAGGATGAGGTCGACACGGAAGAGGACTGGAAGGTCCGTTACCAGAACAATATGAACAA
GATCAAGTCTGGTTCTATTTTCGAAGTGGCTGATGTTTGCCGTAATCTTTACAGACGTGCCTATGGCAAAGAACTCTCCA
TTATGGAGAGAAAGCTCTATGAGAGCGCCTATAATTTAGTAAAGATGGAAATTGCACTAAGCAAGGGTGTACCCCAAGAA
GAAGCCGGAAATATTGTTTCCGATGTTTTAGCAGCTTCAGTGCAAGGGATAGCACCACCACCACCTCCAAAAGAATTGGA
TGATGATTTAGATTTAGAATAA

Upstream 100 bases:

>100_bases
AACCATTCGATTCTGAACTATTTTTCCCAACTTCCTTGACATTGCCCAAATTTGAGGTATACTCAAGCATAAGAGTATTT
ACGGAAGTTATTATACTTAC

Downstream 100 bases:

>100_bases
ACTTCCGTTTTTGCTCAAACTCTTTTATAAGGATTGAGTTATGAAACATTTACTTTCAGCCATTGGGACGCTCCTCGTCT
CTTCGGTATCGTTTTTCTTT

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MATKKLNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSIPVDRAMDVGIRSIIDKKEIK
KVLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVCRNLYRRAYGKELSIMERKLYESAYNLVKMEIALSKGVPQE
EAGNIVSDVLAASVQGIAPPPPPKELDDDLDLE

Sequences:

>Translated_193_residues
MATKKLNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSIPVDRAMDVGIRSIIDKKEIK
KVLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVCRNLYRRAYGKELSIMERKLYESAYNLVKMEIALSKGVPQE
EAGNIVSDVLAASVQGIAPPPPPKELDDDLDLE
>Mature_192_residues
ATKKLNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSIPVDRAMDVGIRSIIDKKEIKK
VLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVCRNLYRRAYGKELSIMERKLYESAYNLVKMEIALSKGVPQEE
AGNIVSDVLAASVQGIAPPPPPKELDDDLDLE

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 21761; Mature: 21629

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKLNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSI
CCCCCCHHHHCCCCEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEEEC
PVDRAMDVGIRSIIDKKEIKKVLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCHHHHHHHH
RNLYRRAYGKELSIMERKLYESAYNLVKMEIALSKGVPQEEAGNIVSDVLAASVQGIAPP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
PPPKELDDDLDLE
CCCCCCCCCCCCC
>Mature Secondary Structure 
ATKKLNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSI
CCCCCHHHHCCCCEECCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCEEEEEC
PVDRAMDVGIRSIIDKKEIKKVLTLLKKDEVDTEEDWKVRYQNNMNKIKSGSIFEVADVC
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHCCCCCHHHHHHHH
RNLYRRAYGKELSIMERKLYESAYNLVKMEIALSKGVPQEEAGNIVSDVLAASVQGIAPP
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
PPPKELDDDLDLE
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]