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The map label for this gene is ydcS [H]

Identifier: 183222012

GI number: 183222012

Start: 2748966

End: 2750135

Strand: Reverse

Name: ydcS [H]

Synonym: LEPBI_I2653

Alternate gene names: 183222012

Gene position: 2750135-2748966 (Counterclockwise)

Preceding gene: 183222017

Following gene: 183222011

Centisome position: 76.4

GC content: 41.03

Gene sequence:

>1170_bases
ATGAAATTCGATTCATACAAACGAGTGGTTTTTTTTACAGCAGTACTTTCGATCGCATTTGCGGTTGCCTGCGGTAAAAA
AGAAACAAAGGTTTCCGAAATTGGACAAGGCGAAGGAGAAGTATCCATCGTTGCTTGGCCAGGTTACATTGAACGTGGTG
AGACAGACAAAGGATATGACTGGGTCACTGAATTTGAAAAAAATACAGGCTGTAAAGTAAATGTAAAAACTGCCGCTACA
TCGGATGAGATGGTAGCACTTATGAATGAAGGTGGATTTGATTTAGTCACTGCGTCAGGTGATGCTTCCCTTCGATTGGT
TGCGGGTGGAAAAGTCCAAGAGATCAACACGGACCTCATCGCAAGTTGGAAAAATGTAGATTCCCGTTTACAAAATGCTC
CTTGGCATACAGTGGATGGTAAACATTACGGAGTTCCTTACCAATGGGGACCGAACGTACTTATGTACAACACAAAAGTT
TTCAAAAAAGCACCTACCAGTTGGAATGTTGTGTTTGAAGAACAAGTGCTTCCTGATGGAAAATCAAACAAAGGAAGAGT
GCAAGCATTCGACGGACCTATTTACATTGCCGATGCTGCTTTGTATCTAAAAGTCGCAAAACCTGAGTTAGGGATTCAAG
ATCCATATGAATTGGATGAAAAACAATACAATGCTGTCATCGAAATCTTAAAGAAACAAAGACAACTTGTTCCAAAATAC
TGGCATGATGCAATGGTGCAAGTGGATGACTTCAAAAAAGAAGGTTTAGTGGCTTCCTCCACTTGGCCATTCCAAGTGAA
TTTACTTGTGAGTGAAAAACAACCTGTGGCTTCCATTGTTCCTGTGGAAGGAGCGACTGGTTGGGCAGATAGCACAATGT
TACACAAAGATTCTAAACACGTGAACTGTGCCTACAAATGGATGGAACACTCTCTATCTCCAAAAGTGCAAGGTGACTTA
GCATCTTGGTTTGGTTCTGTTCCTTCTGTTCCATCTGCTTGTAAAGGCAACGCTCTCCTTGGGGACACTGGGTGTGCGGT
AAACGGTTTCAATAACTTTGAAAAAATCTCATTTTGGAGAACTCCAAAAGAAGATTGTTCCGGTGGAAGAAAATGTGTGC
CTTATAAAAAATGGGCAGAAGATTATATTTCCATCATTGGAAGTAAATAA

Upstream 100 bases:

>100_bases
AATTCCTACCTTTTTTTTGAAATCTTCAGAATTGGTTGCTTAATTTTAATTTTTTGGTATCTAATGCCTGACATAAGTAA
AACCAGGAGCACATAGGTTT

Downstream 100 bases:

>100_bases
ATCCTAACATCAAAAGAGTTCTAAAGGAGATAGAATGGACCAAATTTACGATGTTGAATTTCAAAATGTAACTAGGAAAT
TCGACCAATTTATAGCGGTG

Product: putative spermidine/putrescine-binding periplasmic protein PotF/PotD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKFDSYKRVVFFTAVLSIAFAVACGKKETKVSEIGQGEGEVSIVAWPGYIERGETDKGYDWVTEFEKNTGCKVNVKTAAT
SDEMVALMNEGGFDLVTASGDASLRLVAGGKVQEINTDLIASWKNVDSRLQNAPWHTVDGKHYGVPYQWGPNVLMYNTKV
FKKAPTSWNVVFEEQVLPDGKSNKGRVQAFDGPIYIADAALYLKVAKPELGIQDPYELDEKQYNAVIEILKKQRQLVPKY
WHDAMVQVDDFKKEGLVASSTWPFQVNLLVSEKQPVASIVPVEGATGWADSTMLHKDSKHVNCAYKWMEHSLSPKVQGDL
ASWFGSVPSVPSACKGNALLGDTGCAVNGFNNFEKISFWRTPKEDCSGGRKCVPYKKWAEDYISIIGSK

Sequences:

>Translated_389_residues
MKFDSYKRVVFFTAVLSIAFAVACGKKETKVSEIGQGEGEVSIVAWPGYIERGETDKGYDWVTEFEKNTGCKVNVKTAAT
SDEMVALMNEGGFDLVTASGDASLRLVAGGKVQEINTDLIASWKNVDSRLQNAPWHTVDGKHYGVPYQWGPNVLMYNTKV
FKKAPTSWNVVFEEQVLPDGKSNKGRVQAFDGPIYIADAALYLKVAKPELGIQDPYELDEKQYNAVIEILKKQRQLVPKY
WHDAMVQVDDFKKEGLVASSTWPFQVNLLVSEKQPVASIVPVEGATGWADSTMLHKDSKHVNCAYKWMEHSLSPKVQGDL
ASWFGSVPSVPSACKGNALLGDTGCAVNGFNNFEKISFWRTPKEDCSGGRKCVPYKKWAEDYISIIGSK
>Mature_389_residues
MKFDSYKRVVFFTAVLSIAFAVACGKKETKVSEIGQGEGEVSIVAWPGYIERGETDKGYDWVTEFEKNTGCKVNVKTAAT
SDEMVALMNEGGFDLVTASGDASLRLVAGGKVQEINTDLIASWKNVDSRLQNAPWHTVDGKHYGVPYQWGPNVLMYNTKV
FKKAPTSWNVVFEEQVLPDGKSNKGRVQAFDGPIYIADAALYLKVAKPELGIQDPYELDEKQYNAVIEILKKQRQLVPKY
WHDAMVQVDDFKKEGLVASSTWPFQVNLLVSEKQPVASIVPVEGATGWADSTMLHKDSKHVNCAYKWMEHSLSPKVQGDL
ASWFGSVPSVPSACKGNALLGDTGCAVNGFNNFEKISFWRTPKEDCSGGRKCVPYKKWAEDYISIIGSK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=377, Percent_Identity=60.2122015915119, Blast_Score=499, Evalue=1e-143,
Organism=Escherichia coli, GI1787078, Length=313, Percent_Identity=25.5591054313099, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 43091; Mature: 43091

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFDSYKRVVFFTAVLSIAFAVACGKKETKVSEIGQGEGEVSIVAWPGYIERGETDKGYD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCH
WVTEFEKNTGCKVNVKTAATSDEMVALMNEGGFDLVTASGDASLRLVAGGKVQEINTDLI
HHHHHHCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCEEEECCHHHH
ASWKNVDSRLQNAPWHTVDGKHYGVPYQWGPNVLMYNTKVFKKAPTSWNVVFEEQVLPDG
HHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEECCHHHCCCCCCEEEEEEEECCCC
KSNKGRVQAFDGPIYIADAALYLKVAKPELGIQDPYELDEKQYNAVIEILKKQRQLVPKY
CCCCCEEEEECCCEEEEEEEEEEEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
WHDAMVQVDDFKKEGLVASSTWPFQVNLLVSEKQPVASIVPVEGATGWADSTMLHKDSKH
HHHHEEEEECHHHCCEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCEEECCCCC
VNCAYKWMEHSLSPKVQGDLASWFGSVPSVPSACKGNALLGDTGCAVNGFNNFEKISFWR
CHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCEECCCCCCEEEEEEC
TPKEDCSGGRKCVPYKKWAEDYISIIGSK
CCHHHHCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFDSYKRVVFFTAVLSIAFAVACGKKETKVSEIGQGEGEVSIVAWPGYIERGETDKGYD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCH
WVTEFEKNTGCKVNVKTAATSDEMVALMNEGGFDLVTASGDASLRLVAGGKVQEINTDLI
HHHHHHCCCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCEEEEEECCEEEECCHHHH
ASWKNVDSRLQNAPWHTVDGKHYGVPYQWGPNVLMYNTKVFKKAPTSWNVVFEEQVLPDG
HHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCEEEEECCHHHCCCCCCEEEEEEEECCCC
KSNKGRVQAFDGPIYIADAALYLKVAKPELGIQDPYELDEKQYNAVIEILKKQRQLVPKY
CCCCCEEEEECCCEEEEEEEEEEEEECCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH
WHDAMVQVDDFKKEGLVASSTWPFQVNLLVSEKQPVASIVPVEGATGWADSTMLHKDSKH
HHHHEEEEECHHHCCEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCEEECCCCC
VNCAYKWMEHSLSPKVQGDLASWFGSVPSVPSACKGNALLGDTGCAVNGFNNFEKISFWR
CHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCEECCCCCCEEEEEEC
TPKEDCSGGRKCVPYKKWAEDYISIIGSK
CCHHHHCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]