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The map label for this gene is yddA [C]

Identifier: 183221775

GI number: 183221775

Start: 2474082

End: 2475782

Strand: Direct

Name: yddA [C]

Synonym: LEPBI_I2405

Alternate gene names: 183221775

Gene position: 2474082-2475782 (Clockwise)

Preceding gene: 183221753

Following gene: 183221776

Centisome position: 68.73

GC content: 34.27

Gene sequence:

>1701_bases
ATGACTATCGAACCAATCAAATACCAACGTGGTAAACATTTACTTACAATCATCCATCAATTATTAAAATCAAAACAAGG
ACCAACTGCGATCCGTTATAGTATTTATCTACTACTCCTTGTGATTTGTTTTAACCTCTTTAATGTTTTAAATAGTTTTG
TGGGAAGGGATTTTATCTCATCCATAGAACAAAAAAACGAGGTAGAGTTCTATCAATTTGCACTTCTTTATGGATTGTTA
TTTCTTTTATCAGCGGGCATCGGATCCATTTATCGTTTTATGGAAGAAAGGCTTGGAATTTTATGGCGAGAACAATTAAC
ATGGAGACTCACTGGATCCTACTTAAGTGAAAGAACCTACCATAACATTTTAAATCAAAAAGGAATCGAAAACCCAGACC
AAAGGATTACAGATGATGTAAAAGCTTTTACGACCACAACATTGTCCTTTCTACTTCTATTCCTTGGAGGAGTCTTTTCG
GCCATTTCATTTGCGGGCGTTTTATGGAGTATCAACCCTATTTTATTTTTAGTTGCGGTTCTATATGCTTTGATTGGAAC
CATATCAACTATTTTTTTAGGCAAAGAACTGATCCGACTCAATTACAATCAATTGGATTTGGAAGCCAACTATCGATCTG
ACTTACTCCATATCAAACAACATGCAGAATCAATTGCAGTCACTCACAGGGAATTGAGAATGTCAGTGCGACTCAAATCC
AAACTAAAAAAACTTGTGACCAATTTTAAAAAATTAATTTCTGTTAATTTGCGATTAAGTTTATTTACGAATAGTTATAA
TTATTTTATCCAAATCATTCCGATGCTCATCATCGCACCGAGTTACATGAGAGGAGAAATTGAATTTGGTGTGATCACAC
AAGCAGGTCTTGCATTCACTACATTGCTCAATGCATTTTCACTCATTGTTAGCCAATTCCAATCGATATCTGCATTTACA
GCCGTTGTCAAACGAATACAAACTTTGGATACCGCGATGGTTCACTCGGAGAATACAAATAAAAATAAAGAAAAACTAAA
TTACCATTCCGATGAAATTCAGTTTGAAAATTTTTCTATTTATTCAGGTGATAAATCAAAATTCATCCTTGATCATTTAA
ATTTAATAATCAAAACCAAAGAAAGGTGGCTTATCACAGCCAACGACGAAGAAACAAAATTAAGTTTTTTTCGTGCTTTG
GCAGGAATCAGCAATCATCAAGAAGGGAAAATTTTAAAACCAAGTCGAGATGAAATTTTGTTTTTACCCGAACAACCCTA
TTTACCACCAGGAAGGCTTCGGAATGTGATTGTTCCCGCATTTTTAGGAAACTCAGTCTCTGATTTTCAAGTGATGAAAG
AATTAAAAAATCATAACTTAGATACTTTAGTGAAACGTTTAGGAGGTTTATCTGCATTGAAAGAGTGGGACGATGAACTT
TCATTAGCCGAAAAATTTAGAATCTCAACCATCAGAATTCAATTTGCAAAACCTAAGTTTGTCGTAATCGACAGACCCAC
ATCTAGTGTTGGGAAATTTGAAATTTCTAAAATTCTAAAAAAATTCCATAACTTAGGAATCACAAGCATTGTCCTCGCAA
AAGGGGAAGAAACCGCACTTGAATATGACTATCATTTAAACCTGACTCATTTTGGTAAATGGTCGGTCAATAGAATGAGT
CCATTTTTAAAGGAAGCTTGA

Upstream 100 bases:

>100_bases
TGGATCAAAGCTGAATGGATCTTTCCAGCCGATGGATATGACTGTAAAATAAACCTTGCCAATTTAAAAATTTTGATTTT
AATAATACCCAAATTCATAC

Downstream 100 bases:

>100_bases
TGTACATTTTACAAAACAAATCCGGTCTAAAGATTCAATTTTTATCGAACCTTTCTCTCCATTCCATTTTCTTTCAAAAC
TTATTGGTCAATTTATATTT

Product: ABC transporter permease/ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 566; Mature: 565

Protein sequence:

>566_residues
MTIEPIKYQRGKHLLTIIHQLLKSKQGPTAIRYSIYLLLLVICFNLFNVLNSFVGRDFISSIEQKNEVEFYQFALLYGLL
FLLSAGIGSIYRFMEERLGILWREQLTWRLTGSYLSERTYHNILNQKGIENPDQRITDDVKAFTTTTLSFLLLFLGGVFS
AISFAGVLWSINPILFLVAVLYALIGTISTIFLGKELIRLNYNQLDLEANYRSDLLHIKQHAESIAVTHRELRMSVRLKS
KLKKLVTNFKKLISVNLRLSLFTNSYNYFIQIIPMLIIAPSYMRGEIEFGVITQAGLAFTTLLNAFSLIVSQFQSISAFT
AVVKRIQTLDTAMVHSENTNKNKEKLNYHSDEIQFENFSIYSGDKSKFILDHLNLIIKTKERWLITANDEETKLSFFRAL
AGISNHQEGKILKPSRDEILFLPEQPYLPPGRLRNVIVPAFLGNSVSDFQVMKELKNHNLDTLVKRLGGLSALKEWDDEL
SLAEKFRISTIRIQFAKPKFVVIDRPTSSVGKFEISKILKKFHNLGITSIVLAKGEETALEYDYHLNLTHFGKWSVNRMS
PFLKEA

Sequences:

>Translated_566_residues
MTIEPIKYQRGKHLLTIIHQLLKSKQGPTAIRYSIYLLLLVICFNLFNVLNSFVGRDFISSIEQKNEVEFYQFALLYGLL
FLLSAGIGSIYRFMEERLGILWREQLTWRLTGSYLSERTYHNILNQKGIENPDQRITDDVKAFTTTTLSFLLLFLGGVFS
AISFAGVLWSINPILFLVAVLYALIGTISTIFLGKELIRLNYNQLDLEANYRSDLLHIKQHAESIAVTHRELRMSVRLKS
KLKKLVTNFKKLISVNLRLSLFTNSYNYFIQIIPMLIIAPSYMRGEIEFGVITQAGLAFTTLLNAFSLIVSQFQSISAFT
AVVKRIQTLDTAMVHSENTNKNKEKLNYHSDEIQFENFSIYSGDKSKFILDHLNLIIKTKERWLITANDEETKLSFFRAL
AGISNHQEGKILKPSRDEILFLPEQPYLPPGRLRNVIVPAFLGNSVSDFQVMKELKNHNLDTLVKRLGGLSALKEWDDEL
SLAEKFRISTIRIQFAKPKFVVIDRPTSSVGKFEISKILKKFHNLGITSIVLAKGEETALEYDYHLNLTHFGKWSVNRMS
PFLKEA
>Mature_565_residues
TIEPIKYQRGKHLLTIIHQLLKSKQGPTAIRYSIYLLLLVICFNLFNVLNSFVGRDFISSIEQKNEVEFYQFALLYGLLF
LLSAGIGSIYRFMEERLGILWREQLTWRLTGSYLSERTYHNILNQKGIENPDQRITDDVKAFTTTTLSFLLLFLGGVFSA
ISFAGVLWSINPILFLVAVLYALIGTISTIFLGKELIRLNYNQLDLEANYRSDLLHIKQHAESIAVTHRELRMSVRLKSK
LKKLVTNFKKLISVNLRLSLFTNSYNYFIQIIPMLIIAPSYMRGEIEFGVITQAGLAFTTLLNAFSLIVSQFQSISAFTA
VVKRIQTLDTAMVHSENTNKNKEKLNYHSDEIQFENFSIYSGDKSKFILDHLNLIIKTKERWLITANDEETKLSFFRALA
GISNHQEGKILKPSRDEILFLPEQPYLPPGRLRNVIVPAFLGNSVSDFQVMKELKNHNLDTLVKRLGGLSALKEWDDELS
LAEKFRISTIRIQFAKPKFVVIDRPTSSVGKFEISKILKKFHNLGITSIVLAKGEETALEYDYHLNLTHFGKWSVNRMSP
FLKEA

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=537, Percent_Identity=25.1396648044693, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI9945308, Length=577, Percent_Identity=23.7435008665511, Blast_Score=107, Evalue=3e-23,
Organism=Homo sapiens, GI4506341, Length=513, Percent_Identity=21.6374269005848, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI7262393, Length=220, Percent_Identity=29.0909090909091, Blast_Score=82, Evalue=9e-16,
Organism=Escherichia coli, GI1787772, Length=482, Percent_Identity=24.4813278008299, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17532411, Length=530, Percent_Identity=22.8301886792453, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17532409, Length=471, Percent_Identity=24.6284501061571, Blast_Score=103, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17558960, Length=576, Percent_Identity=22.5694444444444, Blast_Score=95, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17564250, Length=538, Percent_Identity=23.4200743494424, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI72000520, Length=500, Percent_Identity=24.2, Blast_Score=91, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17542146, Length=224, Percent_Identity=28.125, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI72000518, Length=566, Percent_Identity=22.6148409893993, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643394, Length=507, Percent_Identity=23.4714003944773, Blast_Score=105, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 64945; Mature: 64813

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIEPIKYQRGKHLLTIIHQLLKSKQGPTAIRYSIYLLLLVICFNLFNVLNSFVGRDFIS
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIEQKNEVEFYQFALLYGLLFLLSAGIGSIYRFMEERLGILWREQLTWRLTGSYLSERTY
HHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHH
HNILNQKGIENPDQRITDDVKAFTTTTLSFLLLFLGGVFSAISFAGVLWSINPILFLVAV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYALIGTISTIFLGKELIRLNYNQLDLEANYRSDLLHIKQHAESIAVTHRELRMSVRLKS
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKKLVTNFKKLISVNLRLSLFTNSYNYFIQIIPMLIIAPSYMRGEIEFGVITQAGLAFT
HHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCHHCCCEEEEEHHHHHHHHH
TLLNAFSLIVSQFQSISAFTAVVKRIQTLDTAMVHSENTNKNKEKLNYHSDEIQFENFSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEEEE
YSGDKSKFILDHLNLIIKTKERWLITANDEETKLSFFRALAGISNHQEGKILKPSRDEIL
ECCCCCHHHHHHHHHHEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
FLPEQPYLPPGRLRNVIVPAFLGNSVSDFQVMKELKNHNLDTLVKRLGGLSALKEWDDEL
ECCCCCCCCCHHHHHHEEHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
SLAEKFRISTIRIQFAKPKFVVIDRPTSSVGKFEISKILKKFHNLGITSIVLAKGEETAL
HHHHHHEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEE
EYDYHLNLTHFGKWSVNRMSPFLKEA
EEEEEEEEEECCCCCHHHHCHHHHCC
>Mature Secondary Structure 
TIEPIKYQRGKHLLTIIHQLLKSKQGPTAIRYSIYLLLLVICFNLFNVLNSFVGRDFIS
CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIEQKNEVEFYQFALLYGLLFLLSAGIGSIYRFMEERLGILWREQLTWRLTGSYLSERTY
HHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHH
HNILNQKGIENPDQRITDDVKAFTTTTLSFLLLFLGGVFSAISFAGVLWSINPILFLVAV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYALIGTISTIFLGKELIRLNYNQLDLEANYRSDLLHIKQHAESIAVTHRELRMSVRLKS
HHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLKKLVTNFKKLISVNLRLSLFTNSYNYFIQIIPMLIIAPSYMRGEIEFGVITQAGLAFT
HHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCHHCCCEEEEEHHHHHHHHH
TLLNAFSLIVSQFQSISAFTAVVKRIQTLDTAMVHSENTNKNKEKLNYHSDEIQFENFSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEEEE
YSGDKSKFILDHLNLIIKTKERWLITANDEETKLSFFRALAGISNHQEGKILKPSRDEIL
ECCCCCHHHHHHHHHHEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
FLPEQPYLPPGRLRNVIVPAFLGNSVSDFQVMKELKNHNLDTLVKRLGGLSALKEWDDEL
ECCCCCCCCCHHHHHHEEHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH
SLAEKFRISTIRIQFAKPKFVVIDRPTSSVGKFEISKILKKFHNLGITSIVLAKGEETAL
HHHHHHEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCEE
EYDYHLNLTHFGKWSVNRMSPFLKEA
EEEEEEEEEECCCCCHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]