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The map label for this gene is yebA [H]

Identifier: 183221060

GI number: 183221060

Start: 1744115

End: 1745119

Strand: Direct

Name: yebA [H]

Synonym: LEPBI_I1673

Alternate gene names: 183221060

Gene position: 1744115-1745119 (Clockwise)

Preceding gene: 183221059

Following gene: 183221061

Centisome position: 48.45

GC content: 43.68

Gene sequence:

>1005_bases
ATGCTCTCATTGTCGTATTATTTTCATTTTCCAGCTTTCTTTGTTTCTTGTTCAAGAATCCTCCTTCGAGTGCCCGATAG
AATATCTGTGAAGGCAATTCCATTCATCACTGTTCTTTTGTTTGCACTGTCTGGATCAGGGCTTATGGCCAATCCTTTCC
AGAAACTCCAACAAGAGATCAATGAAAGCCTTCCTACTGGCGATTCTACTGTGTTTCGTATTTTTAGTAACCAATCCCAA
GAACAAGAAATCCATAGATTATTTTCTGTCGGAGTGAACCAAACAGAAGAAGAAGAGGTGGAACTTGCATCCCTTGGCCT
TCCCAAATACATTGATGTCTCTCCTGTTGTGAGTAATACAGTGGTCCATGAATCAGGGATCGTTGTGAAAAAATACACAG
TCCAAAAAAAAGACAATCTTTCCAAAATCGCTCGTTCCTTTTCCATTGATGTCGCCAGACTGAAAAAAGCAAATTCCCTC
ACGAGTGACCAATTGAAAATTGGTCAGGTATTGGAAGTTCCCGTACAAGTGAAAAATGCTTCCTCCTCTCGTGTTGTCTT
AAAAAAAGTTTTTATCCTACCTGTCCCGCAAAGCCGTGTGACCTCTCGATTTGGCCGACGTGTGGATCCGTTCAACAAAT
ACAACCGTGTCTACCATTCAGGTCTTGACCTTGCCGCAAAAGTAGGGGCACCTGTTCTCTCAGCAGCCGATGGGGAAGTT
GTCTTTACTGGCCGGAATGGTGGGTATGGAAATTCCGTCACCATCCAACACAAAAATGGGTATAAAACAGTTTACGCCCA
TTGTTCACAGATTTTAGTTGAGGTTGGGGAAACGGTGAAGATGGGGCGTGTGGTGGCACTTGTCGGCAGGACAGGAACCG
CAACAGGGGCTCATTTGCATTTTGAAGTGTTTCGAAACGGAAAAATCATGAACCCGGAATCGGCACTTGGCATGACTGAA
AAACATGTCACAAAACTTCCCAAATCTGAAGTAGCCGGAATGTAA

Upstream 100 bases:

>100_bases
AAAAAGAGAATATGAATTGGCTGACGTGGAAGAGTGGGTGAACCAAAAGTTTTCCCAAGTCGAACAAAATGCCAAAAAAA
CAAAGAAATAAAGGTTTGGG

Downstream 100 bases:

>100_bases
TCGGAGTTTTTCTCCGATTTGTGGGGAGCATGAATCTAATCCTTCAAAGAATCCAATCGAGTCAGTTTTTGACATTGATT
CCGGTCGTTTTATTATTTTC

Product: putative membrane peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLSLSYYFHFPAFFVSCSRILLRVPDRISVKAIPFITVLLFALSGSGLMANPFQKLQQEINESLPTGDSTVFRIFSNQSQ
EQEIHRLFSVGVNQTEEEEVELASLGLPKYIDVSPVVSNTVVHESGIVVKKYTVQKKDNLSKIARSFSIDVARLKKANSL
TSDQLKIGQVLEVPVQVKNASSSRVVLKKVFILPVPQSRVTSRFGRRVDPFNKYNRVYHSGLDLAAKVGAPVLSAADGEV
VFTGRNGGYGNSVTIQHKNGYKTVYAHCSQILVEVGETVKMGRVVALVGRTGTATGAHLHFEVFRNGKIMNPESALGMTE
KHVTKLPKSEVAGM

Sequences:

>Translated_334_residues
MLSLSYYFHFPAFFVSCSRILLRVPDRISVKAIPFITVLLFALSGSGLMANPFQKLQQEINESLPTGDSTVFRIFSNQSQ
EQEIHRLFSVGVNQTEEEEVELASLGLPKYIDVSPVVSNTVVHESGIVVKKYTVQKKDNLSKIARSFSIDVARLKKANSL
TSDQLKIGQVLEVPVQVKNASSSRVVLKKVFILPVPQSRVTSRFGRRVDPFNKYNRVYHSGLDLAAKVGAPVLSAADGEV
VFTGRNGGYGNSVTIQHKNGYKTVYAHCSQILVEVGETVKMGRVVALVGRTGTATGAHLHFEVFRNGKIMNPESALGMTE
KHVTKLPKSEVAGM
>Mature_334_residues
MLSLSYYFHFPAFFVSCSRILLRVPDRISVKAIPFITVLLFALSGSGLMANPFQKLQQEINESLPTGDSTVFRIFSNQSQ
EQEIHRLFSVGVNQTEEEEVELASLGLPKYIDVSPVVSNTVVHESGIVVKKYTVQKKDNLSKIARSFSIDVARLKKANSL
TSDQLKIGQVLEVPVQVKNASSSRVVLKKVFILPVPQSRVTSRFGRRVDPFNKYNRVYHSGLDLAAKVGAPVLSAADGEV
VFTGRNGGYGNSVTIQHKNGYKTVYAHCSQILVEVGETVKMGRVVALVGRTGTATGAHLHFEVFRNGKIMNPESALGMTE
KHVTKLPKSEVAGM

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=136, Percent_Identity=44.1176470588235, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87082174, Length=199, Percent_Identity=29.1457286432161, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789099, Length=95, Percent_Identity=40, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=36.0824742268041, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 36696; Mature: 36696

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLSYYFHFPAFFVSCSRILLRVPDRISVKAIPFITVLLFALSGSGLMANPFQKLQQEI
CCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
NESLPTGDSTVFRIFSNQSQEQEIHRLFSVGVNQTEEEEVELASLGLPKYIDVSPVVSNT
HHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHCE
VVHESGIVVKKYTVQKKDNLSKIARSFSIDVARLKKANSLTSDQLKIGQVLEVPVQVKNA
EEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHEECCEEEECC
SSSRVVLKKVFILPVPQSRVTSRFGRRVDPFNKYNRVYHSGLDLAAKVGAPVLSAADGEV
CCCCEEEEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCEEECCCCCE
VFTGRNGGYGNSVTIQHKNGYKTVYAHCSQILVEVGETVKMGRVVALVGRTGTATGAHLH
EEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCEEEEEEECCCCCCCCEEE
FEVFRNGKIMNPESALGMTEKHVTKLPKSEVAGM
EEEECCCCEECCHHHHCCCHHHHHHCCHHHHCCC
>Mature Secondary Structure
MLSLSYYFHFPAFFVSCSRILLRVPDRISVKAIPFITVLLFALSGSGLMANPFQKLQQEI
CCEEEEEHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
NESLPTGDSTVFRIFSNQSQEQEIHRLFSVGVNQTEEEEVELASLGLPKYIDVSPVVSNT
HHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHCE
VVHESGIVVKKYTVQKKDNLSKIARSFSIDVARLKKANSLTSDQLKIGQVLEVPVQVKNA
EEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHEECCEEEECC
SSSRVVLKKVFILPVPQSRVTSRFGRRVDPFNKYNRVYHSGLDLAAKVGAPVLSAADGEV
CCCCEEEEEEEEEECCHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHCCCEEECCCCCE
VFTGRNGGYGNSVTIQHKNGYKTVYAHCSQILVEVGETVKMGRVVALVGRTGTATGAHLH
EEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCHHHHCEEEEEEECCCCCCCCEEE
FEVFRNGKIMNPESALGMTEKHVTKLPKSEVAGM
EEEECCCCEECCHHHHCCCHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]