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The map label for this gene is ycgE [H]

Identifier: 183220765

GI number: 183220765

Start: 1434158

End: 1434622

Strand: Direct

Name: ycgE [H]

Synonym: LEPBI_I1376

Alternate gene names: 183220765

Gene position: 1434158-1434622 (Clockwise)

Preceding gene: 183220763

Following gene: 183220766

Centisome position: 39.84

GC content: 35.48

Gene sequence:

>465_bases
ATGGATCCAATGAAAATAGAAATTTTCAAACAAACAACACGTCAGTATTTTGAAACAGCTCTTCTGATGCACGAAACCAT
TGCATCACATGTTGGTCTTTCGGGGACAGACCATAAATATTTGGGATATCTCATTGAAAACGGTGAGATGACAGCGGGGG
AACTCGCAAAATTATCAGGGCTGACAACCGGTGCTATCACTGGTGTCATTGATCGTTTAGAAAAAAATAAATTGGTGAAA
AGGAAATTTTTACAATCGGATCGAAGGAAAGTGATCATTGTGCCAAATTTAGAAAAAGCAAACCAACTTTTTTCACCAAT
CTTTAAGAAATTACAAAAAGAAACAGACCTTTTGATTTCAAGTTTTACAAGTCGAGAATTGGAAGTGGTTCATCGGTATT
TTGAGTCTGCGATCGGAATCATGGATAAAATGTCTAAAAATTTAAAGGAATGGAATGATATATGA

Upstream 100 bases:

>100_bases
ATTTACATTTCATATATGTCTTAGAAGCTAAGATATATATGAAACAAGATATATTAAGAATAAGATATCTAATAAATAAG
ATAAATAGAGGCAAAGAGAA

Downstream 100 bases:

>100_bases
ATGGAAATTTAGAAAATTGTTTCGGATTTGCGTTAACGATTGGGATTCCCGATTTAAACATTTTTGTTTCAAACCATTCT
GTATCCATTGCTAAGTTTTC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MDPMKIEIFKQTTRQYFETALLMHETIASHVGLSGTDHKYLGYLIENGEMTAGELAKLSGLTTGAITGVIDRLEKNKLVK
RKFLQSDRRKVIIVPNLEKANQLFSPIFKKLQKETDLLISSFTSRELEVVHRYFESAIGIMDKMSKNLKEWNDI

Sequences:

>Translated_154_residues
MDPMKIEIFKQTTRQYFETALLMHETIASHVGLSGTDHKYLGYLIENGEMTAGELAKLSGLTTGAITGVIDRLEKNKLVK
RKFLQSDRRKVIIVPNLEKANQLFSPIFKKLQKETDLLISSFTSRELEVVHRYFESAIGIMDKMSKNLKEWNDI
>Mature_154_residues
MDPMKIEIFKQTTRQYFETALLMHETIASHVGLSGTDHKYLGYLIENGEMTAGELAKLSGLTTGAITGVIDRLEKNKLVK
RKFLQSDRRKVIIVPNLEKANQLFSPIFKKLQKETDLLISSFTSRELEVVHRYFESAIGIMDKMSKNLKEWNDI

Specific function: Unknown

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17664; Mature: 17664

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPMKIEIFKQTTRQYFETALLMHETIASHVGLSGTDHKYLGYLIENGEMTAGELAKLSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCHHHHHHHHC
LTTGAITGVIDRLEKNKLVKRKFLQSDRRKVIIVPNLEKANQLFSPIFKKLQKETDLLIS
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
SFTSRELEVVHRYFESAIGIMDKMSKNLKEWNDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPMKIEIFKQTTRQYFETALLMHETIASHVGLSGTDHKYLGYLIENGEMTAGELAKLSG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCHHHHHHHHC
LTTGAITGVIDRLEKNKLVKRKFLQSDRRKVIIVPNLEKANQLFSPIFKKLQKETDLLIS
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
SFTSRELEVVHRYFESAIGIMDKMSKNLKEWNDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]