| Definition | Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_010602 |
| Length | 3,599,677 |
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The map label for this gene is recJ [H]
Identifier: 183220699
GI number: 183220699
Start: 1363581
End: 1365569
Strand: Reverse
Name: recJ [H]
Synonym: LEPBI_I1309
Alternate gene names: 183220699
Gene position: 1365569-1363581 (Counterclockwise)
Preceding gene: 183220700
Following gene: 183220675
Centisome position: 37.94
GC content: 40.93
Gene sequence:
>1989_bases TTGTTGTCTGAAGTTCGAACCAAAGTTGAATCCAAAAGGCCTTTACTTCGATACTTAGTGGATCGAAGAGAAGGTCTAAA AAACACTTCCCCGAAAGAACTCCTATTCTCTGATTTTTCTTGTCTTCATTCCCCCTTCTCCCTTCCGGACATCGAAGACG CGGTATCTCTCCTCCTTTCCTTTGCCAAATCTAATAAAAAAATCTTATTATATGGAGACCGCGACTCCGATGGAGTGAGT TCTACCTGTTTACTTGCTTTCTTTTTGAAATCTCATCCTGAATTTTTGACAGCCAACTTGGAAGTAATGGTCTCTTCAGA AAGTGATCCGTATGGTCTTTGTAAAGAAGCTGTGAGTAAAATCCAAAAAGCCAAACCAGACTTACTTGTCACTTTAGACT TTGGTTCAAGCCAAGCGGATGAAATCGATTCCTTAACTGCATTGGGAATCCAAGTGATTGTCCTTGACCATCATGAAGTT CCCGTTCGTATCCCTAAAAACTGCGCCTTAGTGAACCCAAGACGAACGGATTCCGAATACCCAGAAAAAAAAATCTGCAC TGCTGCCTTATCCTTCAAACTTGTCTCTGCCATTTTATTTCGGACTAGTAAAGAATGGAACCAGTTGTATACAAAAACAG TAACAAATGAAGATGGGACGAAAGAAGTTTTGTATTTCCGAAATGGAATCAAACTTTCCAAAGACCAGTTAGATTTGATT CAAAATCCAAGGGAAAACCCATCCAAAATGGAGAATCAAATTCCCATCGGAGACAAAAATTCAGAATCGGCCCCCATCGA TCTATCGAGTGCACTTCCCTTCCCAGAAGAGTTTTCCACCAATATCCCGTTAGATGATGAACGAAAACTGTTTTTTTACC AATGCCAAAAAATCCCGGAATTTTTTGAACAATTGGAAGAAGAAACGGATCTTGCTGGGATCGGTACCATCACTGATATG ATGCCTCTTGTCGGAGAAAACCGCCATTTTGTCAAACTGGCACTCACTTCTCTCACCAAACTTTATGTAGGTGACAAAAA AAGGAAAGGTCTCAAAGAACTATTAAAAGAACTGAAACTCAATCCCCTTGGGATCACCACAAAAGACTTGGGTTGGTCCA TTGGACCTGTGATCAATGCTGCAGGTCGAATGGGAAAAACAGAAGAAGCAGTAAACCTACTTCTCTCCGAAAATGAATTG GAAGCGAAAACAAGGGCAAAACTCCTTCTTTCCATCAATGAAGAACGAAAAGAAAGAACAAAACGAAACATGGACCGTGT AGAACGATACTTTGCACGGAAACCGGAACGAACCACGCATGATGCGATTTATTGTTACGAACCTGATATGGAACCTGGAG TGAGTGGGATCGTTGCCACAAGGATGGTAGATACCTACAAAAAACCTGCCATCTTTATTGCACCTGACAACGGTGATGCG AGAGGAAGTGTCCGTTCGTATGGACAAGAAAATGTCCTCACCTTACTCGAATCCTTATCTGAACATTTTTTACATTTTGG TGGCCATCCCGAAGCAGGTGGTTTTTCTATTTCCATCGATCAAATTCCGAAATTGGAAGCCGCCCTCTACGAAAAAGCAA AACTTTGGTTAGCGGAAGATGAAGAAAGACCGAAAGAACATTTGATCAATACCGATTTTACCGTTTTACCTGAAGAAATG GGTGAAAAACTCTTAAAGGAATGGAAAGACTTAGAACCCTTTGGCCAAGGAAATCCTGATATCAAACTTGGGATCAGGAA TGCCAAAGCTATCCACCTAACGCCTCTCAGCGGTGGAAAACATGTTCGTTTCCATATCATTGGGAGTGGTTCTTTAAAAT ATATGATTTGGAACAAAGGGGAAGAATTCCAAAGCTTTATGTCCAATCATGGTAGCTTTGATTTGGTAGGGAGTTTAGAA GAAAACTTTTACCAAGGAAGGAGCACACTACAATTCATTGTGGAATGGTTTGGAAAAGCAGAATCCTAA
Upstream 100 bases:
>100_bases GAAAAGTTGTAGGAGATATCAAAACTCCTGGACTCGAAGTGGAATTTGGTTCCAAAATTATTGGCAATTGCATCATGTAA CAAAGGTTCACTTCGGACCT
Downstream 100 bases:
>100_bases AATCCATCACCCGCCTAACAGGCGAATGAAGGATTTGGTTCTTATACAAGAAAAGAAGTGTTCAAATACAATTATGCATT GATGAGGACTTTCGATTCAT
Product: single-stranded-DNA-specific exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 662; Mature: 662
Protein sequence:
>662_residues MLSEVRTKVESKRPLLRYLVDRREGLKNTSPKELLFSDFSCLHSPFSLPDIEDAVSLLLSFAKSNKKILLYGDRDSDGVS STCLLAFFLKSHPEFLTANLEVMVSSESDPYGLCKEAVSKIQKAKPDLLVTLDFGSSQADEIDSLTALGIQVIVLDHHEV PVRIPKNCALVNPRRTDSEYPEKKICTAALSFKLVSAILFRTSKEWNQLYTKTVTNEDGTKEVLYFRNGIKLSKDQLDLI QNPRENPSKMENQIPIGDKNSESAPIDLSSALPFPEEFSTNIPLDDERKLFFYQCQKIPEFFEQLEEETDLAGIGTITDM MPLVGENRHFVKLALTSLTKLYVGDKKRKGLKELLKELKLNPLGITTKDLGWSIGPVINAAGRMGKTEEAVNLLLSENEL EAKTRAKLLLSINEERKERTKRNMDRVERYFARKPERTTHDAIYCYEPDMEPGVSGIVATRMVDTYKKPAIFIAPDNGDA RGSVRSYGQENVLTLLESLSEHFLHFGGHPEAGGFSISIDQIPKLEAALYEKAKLWLAEDEERPKEHLINTDFTVLPEEM GEKLLKEWKDLEPFGQGNPDIKLGIRNAKAIHLTPLSGGKHVRFHIIGSGSLKYMIWNKGEEFQSFMSNHGSFDLVGSLE ENFYQGRSTLQFIVEWFGKAES
Sequences:
>Translated_662_residues MLSEVRTKVESKRPLLRYLVDRREGLKNTSPKELLFSDFSCLHSPFSLPDIEDAVSLLLSFAKSNKKILLYGDRDSDGVS STCLLAFFLKSHPEFLTANLEVMVSSESDPYGLCKEAVSKIQKAKPDLLVTLDFGSSQADEIDSLTALGIQVIVLDHHEV PVRIPKNCALVNPRRTDSEYPEKKICTAALSFKLVSAILFRTSKEWNQLYTKTVTNEDGTKEVLYFRNGIKLSKDQLDLI QNPRENPSKMENQIPIGDKNSESAPIDLSSALPFPEEFSTNIPLDDERKLFFYQCQKIPEFFEQLEEETDLAGIGTITDM MPLVGENRHFVKLALTSLTKLYVGDKKRKGLKELLKELKLNPLGITTKDLGWSIGPVINAAGRMGKTEEAVNLLLSENEL EAKTRAKLLLSINEERKERTKRNMDRVERYFARKPERTTHDAIYCYEPDMEPGVSGIVATRMVDTYKKPAIFIAPDNGDA RGSVRSYGQENVLTLLESLSEHFLHFGGHPEAGGFSISIDQIPKLEAALYEKAKLWLAEDEERPKEHLINTDFTVLPEEM GEKLLKEWKDLEPFGQGNPDIKLGIRNAKAIHLTPLSGGKHVRFHIIGSGSLKYMIWNKGEEFQSFMSNHGSFDLVGSLE ENFYQGRSTLQFIVEWFGKAES >Mature_662_residues MLSEVRTKVESKRPLLRYLVDRREGLKNTSPKELLFSDFSCLHSPFSLPDIEDAVSLLLSFAKSNKKILLYGDRDSDGVS STCLLAFFLKSHPEFLTANLEVMVSSESDPYGLCKEAVSKIQKAKPDLLVTLDFGSSQADEIDSLTALGIQVIVLDHHEV PVRIPKNCALVNPRRTDSEYPEKKICTAALSFKLVSAILFRTSKEWNQLYTKTVTNEDGTKEVLYFRNGIKLSKDQLDLI QNPRENPSKMENQIPIGDKNSESAPIDLSSALPFPEEFSTNIPLDDERKLFFYQCQKIPEFFEQLEEETDLAGIGTITDM MPLVGENRHFVKLALTSLTKLYVGDKKRKGLKELLKELKLNPLGITTKDLGWSIGPVINAAGRMGKTEEAVNLLLSENEL EAKTRAKLLLSINEERKERTKRNMDRVERYFARKPERTTHDAIYCYEPDMEPGVSGIVATRMVDTYKKPAIFIAPDNGDA RGSVRSYGQENVLTLLESLSEHFLHFGGHPEAGGFSISIDQIPKLEAALYEKAKLWLAEDEERPKEHLINTDFTVLPEEM GEKLLKEWKDLEPFGQGNPDIKLGIRNAKAIHLTPLSGGKHVRFHIIGSGSLKYMIWNKGEEFQSFMSNHGSFDLVGSLE ENFYQGRSTLQFIVEWFGKAES
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=284, Percent_Identity=31.3380281690141, Blast_Score=113, Evalue=4e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 74720; Mature: 74720
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSEVRTKVESKRPLLRYLVDRREGLKNTSPKELLFSDFSCLHSPFSLPDIEDAVSLLLS CCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH FAKSNKKILLYGDRDSDGVSSTCLLAFFLKSHPEFLTANLEVMVSSESDPYGLCKEAVSK HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHH IQKAKPDLLVTLDFGSSQADEIDSLTALGIQVIVLDHHEVPVRIPKNCALVNPRRTDSEY HHHCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCEEECCCCEEECCCCCCCCC PEKKICTAALSFKLVSAILFRTSKEWNQLYTKTVTNEDGTKEVLYFRNGIKLSKDQLDLI CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCEECHHHHHHH QNPRENPSKMENQIPIGDKNSESAPIDLSSALPFPEEFSTNIPLDDERKLFFYQCQKIPE CCCCCCHHHHHCCCCCCCCCCCCCCEEHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHH FFEQLEEETDLAGIGTITDMMPLVGENRHFVKLALTSLTKLYVGDKKRKGLKELLKELKL HHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCC NPLGITTKDLGWSIGPVINAAGRMGKTEEAVNLLLSENELEAKTRAKLLLSINEERKERT CCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHEECCHHHHHHH KRNMDRVERYFARKPERTTHDAIYCYEPDMEPGVSGIVATRMVDTYKKPAIFIAPDNGDA HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC RGSVRSYGQENVLTLLESLSEHFLHFGGHPEAGGFSISIDQIPKLEAALYEKAKLWLAED CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHEEECCC EERPKEHLINTDFTVLPEEMGEKLLKEWKDLEPFGQGNPDIKLGIRNAKAIHLTPLSGGK CCCHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCC HVRFHIIGSGSLKYMIWNKGEEFQSFMSNHGSFDLVGSLEENFYQGRSTLQFIVEWFGKA EEEEEEEECCCEEEEEECCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC ES CC >Mature Secondary Structure MLSEVRTKVESKRPLLRYLVDRREGLKNTSPKELLFSDFSCLHSPFSLPDIEDAVSLLLS CCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH FAKSNKKILLYGDRDSDGVSSTCLLAFFLKSHPEFLTANLEVMVSSESDPYGLCKEAVSK HHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHHHHHHHHH IQKAKPDLLVTLDFGSSQADEIDSLTALGIQVIVLDHHEVPVRIPKNCALVNPRRTDSEY HHHCCCCEEEEEECCCCCHHHHHHHHHCCEEEEEEECCCCCEEECCCCEEECCCCCCCCC PEKKICTAALSFKLVSAILFRTSKEWNQLYTKTVTNEDGTKEVLYFRNGIKLSKDQLDLI CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEEEEEEECCCEECHHHHHHH QNPRENPSKMENQIPIGDKNSESAPIDLSSALPFPEEFSTNIPLDDERKLFFYQCQKIPE CCCCCCHHHHHCCCCCCCCCCCCCCEEHHCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHH FFEQLEEETDLAGIGTITDMMPLVGENRHFVKLALTSLTKLYVGDKKRKGLKELLKELKL HHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHCCC NPLGITTKDLGWSIGPVINAAGRMGKTEEAVNLLLSENELEAKTRAKLLLSINEERKERT CCCCCCHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHEECCHHHHHHH KRNMDRVERYFARKPERTTHDAIYCYEPDMEPGVSGIVATRMVDTYKKPAIFIAPDNGDA HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC RGSVRSYGQENVLTLLESLSEHFLHFGGHPEAGGFSISIDQIPKLEAALYEKAKLWLAED CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHEEECCC EERPKEHLINTDFTVLPEEMGEKLLKEWKDLEPFGQGNPDIKLGIRNAKAIHLTPLSGGK CCCHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEEECCCCC HVRFHIIGSGSLKYMIWNKGEEFQSFMSNHGSFDLVGSLEENFYQGRSTLQFIVEWFGKA EEEEEEEECCCEEEEEECCCHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC ES CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]