Click here to switch to the map view.

The map label for this gene is ynfJ [C]

Identifier: 183220062

GI number: 183220062

Start: 654491

End: 656305

Strand: Direct

Name: ynfJ [C]

Synonym: LEPBI_I0649

Alternate gene names: 183220062

Gene position: 654491-656305 (Clockwise)

Preceding gene: 183220059

Following gene: 183220063

Centisome position: 18.18

GC content: 41.43

Gene sequence:

>1815_bases
ATGCGGCTCCCATTTGGTCTAAATGCTGTGCTTTCGATCCAAGGACCAAGGTCGATTTATGTCTTTTCTCTCTTGATCGG
TCTACTTTCCGGGTTTGGGGCATACGGGTTCAATTGGGCCCTCACATGGACTGAATCCTTCACCTTCGGTAATCTCATCG
GATATGACCCAGGTACTCCCGCAGGTGACCTAAATTTCCATTCGGTGGGAACCGTAGCGGTTTTATCTCCCTTATGGATC
TTATTTTTGCCTGCCATCGGCGGATTACTTGTTGGAATCATCACCAGTTTTTTTTGCCCAGAAGCGCAAGGGGGAGGAAC
CGATTCCCTCATCCATTCCTTTCATTTCAATGAAGGAAAAATTCATACAAAGGTTCCGTTTTTTAAAGCAATTGCCACCA
TACTCACATTAGGTTCTGGAGGATCGGGGGGGAAGGAAGGTCCTACAGCTCAAATCGGAGCAGGATTCGGATCAAGTCTC
GCTAATTTTTTAGGAGCTGGGGCAAGGGCCAGGCGAACTCTGATGCTTGCAGGAACAGCAGGAGGTTTGGGTGCCATCTT
TCGTGCTCCGTTAGGTGGTGCGATCACAGCCGTGGAGATGGTATACCAAGAAGACATTGAAAGTGATTCGCTTGTTCCTT
GTATTTTATCTTCTGTGACTGCATATCTGACATATACGAGTATTGCTGGCAGCGGATCCATTTTTTCCGTTCAAGAATAC
AGTTTGAATGACTACAGGCATATTCCCCTCTACATCGTGCTTGGTCTTTTGTGTTATGTGGTGGGTTATTTTTTTGTGAA
GGTATACCACTTCGTTCAGGATATATTTTCAAAACTACCATTGCCAAATTATTTGAAACCAGCGTTTGGTGGTCTTATCG
TTGGCTGTATTGCATTACTTTTTCCAGAAGTGTTAGGTTCTGGTTTTGGTCTCATCCAAAGAATGATCAATGGGGAAGTG
CTAACATCTACTAGTTTTGGCTTTTCGGGGCCGTTTTTTTTACTCGCAGTCGCTATCTTTAAAGTGTTTTCAACTTCTCT
CACTGTAGGATCCGGAAGTTCGGGTGGTTTACTTGGACCTTCTTTTGCCATCGGAGGAATGTTAGGTGCATTTGTGGGTA
CAATGGCAAATGTTTTGTTTCCAGAACTGAATATCATTGTTTTCCCATTTTTACTTGTTGGGATGGGTTCCTTTTTTGCA
GGAGTGGCAAGGGCTCCCATTGCTGGAATGATTATGGTTTGTGATATGATTGGAAGTTATGCTTTATTACCAGCGCTTAT
GATTGTTTCCATGATCGCAGTGGTACTCTCTCATAAAATTTCAATCTACCGCAATCAAATCAAAAATCGATTTTTATCAC
CATCTCATCATTGGGATATGAACCAAGACATAATGGATCGCATTCGGATTTTGGATCATTTTACTGAGTTTAGAAAGTAT
GCAATGGTTTCAGAACATTTATCGTTAACCCAATTGCAGTCGAATGCTCCCGGCATCCAAGCAAGTGATTTTATTTTGAT
TGGATCCAATGAGGAATACAAAGGAATTGTTTCCCTCAGAAAAAATAGAATCCTTCCAGAATATGAAGCAGAGCTTAAAA
ATTTAATTACCTGCGGTGAAATTGTACAAGATGTGCCAGCCGTGTCTCAATCAGATACTTTGGGCAAAGCCCTTCGTATT
TTATTGGAATATGATGTCGACAAACTCGCTATTGTTGAAGACAATCGATGTTTAGGATATTTACGTTATATTGATTTATT
CAATGCATATCAAAACGAAGTCAAAAATAAAAACAAACAAAGAAAAGCTGTATGA

Upstream 100 bases:

>100_bases
CAATCGGAGCATACCATCCAACCGTCCTAGGAATTCCTTATTGGGTCAAGAGGATTCAGAATTTCCTTGGGAAATTTGGT
GGAAAATCTAAGATTGACAA

Downstream 100 bases:

>100_bases
TACATTCCATTGGCACGAATCATTCTAAAATTATAAAATTCCAATTTCGATTCTATCGAATTTTTAACGTTTTTGTCATT
TTGTTCCTGTTTGCCAATTG

Product: putative voltage-gated ClC-type chloride channel eriC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MRLPFGLNAVLSIQGPRSIYVFSLLIGLLSGFGAYGFNWALTWTESFTFGNLIGYDPGTPAGDLNFHSVGTVAVLSPLWI
LFLPAIGGLLVGIITSFFCPEAQGGGTDSLIHSFHFNEGKIHTKVPFFKAIATILTLGSGGSGGKEGPTAQIGAGFGSSL
ANFLGAGARARRTLMLAGTAGGLGAIFRAPLGGAITAVEMVYQEDIESDSLVPCILSSVTAYLTYTSIAGSGSIFSVQEY
SLNDYRHIPLYIVLGLLCYVVGYFFVKVYHFVQDIFSKLPLPNYLKPAFGGLIVGCIALLFPEVLGSGFGLIQRMINGEV
LTSTSFGFSGPFFLLAVAIFKVFSTSLTVGSGSSGGLLGPSFAIGGMLGAFVGTMANVLFPELNIIVFPFLLVGMGSFFA
GVARAPIAGMIMVCDMIGSYALLPALMIVSMIAVVLSHKISIYRNQIKNRFLSPSHHWDMNQDIMDRIRILDHFTEFRKY
AMVSEHLSLTQLQSNAPGIQASDFILIGSNEEYKGIVSLRKNRILPEYEAELKNLITCGEIVQDVPAVSQSDTLGKALRI
LLEYDVDKLAIVEDNRCLGYLRYIDLFNAYQNEVKNKNKQRKAV

Sequences:

>Translated_604_residues
MRLPFGLNAVLSIQGPRSIYVFSLLIGLLSGFGAYGFNWALTWTESFTFGNLIGYDPGTPAGDLNFHSVGTVAVLSPLWI
LFLPAIGGLLVGIITSFFCPEAQGGGTDSLIHSFHFNEGKIHTKVPFFKAIATILTLGSGGSGGKEGPTAQIGAGFGSSL
ANFLGAGARARRTLMLAGTAGGLGAIFRAPLGGAITAVEMVYQEDIESDSLVPCILSSVTAYLTYTSIAGSGSIFSVQEY
SLNDYRHIPLYIVLGLLCYVVGYFFVKVYHFVQDIFSKLPLPNYLKPAFGGLIVGCIALLFPEVLGSGFGLIQRMINGEV
LTSTSFGFSGPFFLLAVAIFKVFSTSLTVGSGSSGGLLGPSFAIGGMLGAFVGTMANVLFPELNIIVFPFLLVGMGSFFA
GVARAPIAGMIMVCDMIGSYALLPALMIVSMIAVVLSHKISIYRNQIKNRFLSPSHHWDMNQDIMDRIRILDHFTEFRKY
AMVSEHLSLTQLQSNAPGIQASDFILIGSNEEYKGIVSLRKNRILPEYEAELKNLITCGEIVQDVPAVSQSDTLGKALRI
LLEYDVDKLAIVEDNRCLGYLRYIDLFNAYQNEVKNKNKQRKAV
>Mature_604_residues
MRLPFGLNAVLSIQGPRSIYVFSLLIGLLSGFGAYGFNWALTWTESFTFGNLIGYDPGTPAGDLNFHSVGTVAVLSPLWI
LFLPAIGGLLVGIITSFFCPEAQGGGTDSLIHSFHFNEGKIHTKVPFFKAIATILTLGSGGSGGKEGPTAQIGAGFGSSL
ANFLGAGARARRTLMLAGTAGGLGAIFRAPLGGAITAVEMVYQEDIESDSLVPCILSSVTAYLTYTSIAGSGSIFSVQEY
SLNDYRHIPLYIVLGLLCYVVGYFFVKVYHFVQDIFSKLPLPNYLKPAFGGLIVGCIALLFPEVLGSGFGLIQRMINGEV
LTSTSFGFSGPFFLLAVAIFKVFSTSLTVGSGSSGGLLGPSFAIGGMLGAFVGTMANVLFPELNIIVFPFLLVGMGSFFA
GVARAPIAGMIMVCDMIGSYALLPALMIVSMIAVVLSHKISIYRNQIKNRFLSPSHHWDMNQDIMDRIRILDHFTEFRKY
AMVSEHLSLTQLQSNAPGIQASDFILIGSNEEYKGIVSLRKNRILPEYEAELKNLITCGEIVQDVPAVSQSDTLGKALRI
LLEYDVDKLAIVEDNRCLGYLRYIDLFNAYQNEVKNKNKQRKAV

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family [H]

Homologues:

Organism=Escherichia coli, GI87081943, Length=340, Percent_Identity=29.7058823529412, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1786350, Length=432, Percent_Identity=27.3148148148148, Blast_Score=97, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 65148; Mature: 65148

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPFGLNAVLSIQGPRSIYVFSLLIGLLSGFGAYGFNWALTWTESFTFGNLIGYDPGTP
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEECCCCCCC
AGDLNFHSVGTVAVLSPLWILFLPAIGGLLVGIITSFFCPEAQGGGTDSLIHSFHFNEGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCE
IHTKVPFFKAIATILTLGSGGSGGKEGPTAQIGAGFGSSLANFLGAGARARRTLMLAGTA
EEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCEEEEEEECC
GGLGAIFRAPLGGAITAVEMVYQEDIESDSLVPCILSSVTAYLTYTSIAGSGSIFSVQEY
CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
SLNDYRHIPLYIVLGLLCYVVGYFFVKVYHFVQDIFSKLPLPNYLKPAFGGLIVGCIALL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
FPEVLGSGFGLIQRMINGEVLTSTSFGFSGPFFLLAVAIFKVFSTSLTVGSGSSGGLLGP
HHHHHCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCEECCCCCCCCCCC
SFAIGGMLGAFVGTMANVLFPELNIIVFPFLLVGMGSFFAGVARAPIAGMIMVCDMIGSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALLPALMIVSMIAVVLSHKISIYRNQIKNRFLSPSHHWDMNQDIMDRIRILDHFTEFRKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AMVSEHLSLTQLQSNAPGIQASDFILIGSNEEYKGIVSLRKNRILPEYEAELKNLITCGE
HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IVQDVPAVSQSDTLGKALRILLEYDVDKLAIVEDNRCLGYLRYIDLFNAYQNEVKNKNKQ
HHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHH
RKAV
CCCC
>Mature Secondary Structure
MRLPFGLNAVLSIQGPRSIYVFSLLIGLLSGFGAYGFNWALTWTESFTFGNLIGYDPGTP
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEECCCCCCC
AGDLNFHSVGTVAVLSPLWILFLPAIGGLLVGIITSFFCPEAQGGGTDSLIHSFHFNEGK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCE
IHTKVPFFKAIATILTLGSGGSGGKEGPTAQIGAGFGSSLANFLGAGARARRTLMLAGTA
EEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCEEEEEEECC
GGLGAIFRAPLGGAITAVEMVYQEDIESDSLVPCILSSVTAYLTYTSIAGSGSIFSVQEY
CCHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
SLNDYRHIPLYIVLGLLCYVVGYFFVKVYHFVQDIFSKLPLPNYLKPAFGGLIVGCIALL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
FPEVLGSGFGLIQRMINGEVLTSTSFGFSGPFFLLAVAIFKVFSTSLTVGSGSSGGLLGP
HHHHHCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCEECCCCCCCCCCC
SFAIGGMLGAFVGTMANVLFPELNIIVFPFLLVGMGSFFAGVARAPIAGMIMVCDMIGSY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALLPALMIVSMIAVVLSHKISIYRNQIKNRFLSPSHHWDMNQDIMDRIRILDHFTEFRKY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
AMVSEHLSLTQLQSNAPGIQASDFILIGSNEEYKGIVSLRKNRILPEYEAELKNLITCGE
HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
IVQDVPAVSQSDTLGKALRILLEYDVDKLAIVEDNRCLGYLRYIDLFNAYQNEVKNKNKQ
HHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHH
RKAV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]