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The map label for this gene is ydiU [C]

Identifier: 183219835

GI number: 183219835

Start: 409370

End: 410836

Strand: Direct

Name: ydiU [C]

Synonym: LEPBI_I0413

Alternate gene names: 183219835

Gene position: 409370-410836 (Clockwise)

Preceding gene: 183219834

Following gene: 183219844

Centisome position: 11.37

GC content: 42.19

Gene sequence:

>1467_bases
ATGCCATCCCTTTCCTTTCCATCATTTCCATTAGTGGAAGCAACTTATACATCCTTACCCAATTCTTTTTTCCAAGTTAC
CAAACCCACACCAGTAACTTCTCCGGAAGTTCTATTTTGGAACGATGCATTGGCATTGGAGTTTCAATTTTCGCATTGGA
AAAAACAGGAAGAAGCGACCGCTCGTTTTTTTTCCGGGTCAATCCTGCCGGAAGGAATTGAACCATTTGCCCAAGCCTAT
GCGGGCCATCAGTTTGGACATTTTACGATGTTAGGTGACGGTCGAACGATTGTGATGGGAGAATTCAAAAACAAAAATGG
AGAAAGATTCGATTTCCAATGGAAAGGATCAGGTAGGACCAAGTATTCTAGAAATGGTGATGGACGTGCGACTATCAGTG
CGATGGTGCGAGAGTACATCATGAGTGAAGCGATGGCAGGTTTGCGGATTCCAACAACTCGAAGTTTGGCGGTTGTGAAA
ACTGGGGAGGCTGTTTTAAGAGAGGATCCCCAAGAAGGAGCCGTTTTGACTCGAGTGGCGAAAAGCCATATTCGAGTGGG
TACATTTGAATATGCCTACCAAGCTCTATCCTTAGAAGAATTGGAAGCATTATTTTTATACACTGCGAGGAGGCATGCCC
CTGATGTTTTAAACACAGAGAATCCTGCGCTTGCATTTTTAGAGTTTGTGATGAGGCGCCAAGTCTCACTCATTACCAAT
TGGATGAGGGTTGGCTTCATCCATGGTGTGATGAATACAGACAATATGAGTATTGCTGGAGAGACAATCGATTATGGTCC
TTGTGCCTTTATGAATGGATTTTCCGCAAAACGTGTGTTTAGCTCCATCGATGTGAATGGTCGTTATGCATTTTCCAATC
AAGTGGGGATTGCCCAATGGAACTTAGCATGTTTGACAAATTCGCTTCTCCCTCTCTTAGATCCAAATCAAGAAACCGCG
ATTGCACTGGCAAAAACAAAACTGAATGAATTGGAATCTTGGTTTCATGAAAGTTACATACGAATGTTAGGTGAAAAAAT
TGGATTCCCTAACCTAACAGAAAAAGATTTGCTATTACTCCAAAGCCTTTACCAGTGGATGCAAGATACCGAAGCTGATT
TTACCAATACATTTCTTGTTTTGGAAGGCGTTTACTCTCCTAAGGATACAATTTATAACGATATTCGATGGAAAGATTGG
GTGAAACTTTGGAAGGAAGAGAAAACGAAGCAGGGGATCCGAGACGAAGATGCGATCTCACTGATGCAAAAAACAAATCC
AAGCTTTGTACCTAGAAATCACTTAGTGGAAATGGCCCTTGCTAACGTTCACCAAGGAAATACGAGTGTTGTGGATCAAT
TCATTGAAAGGAGTTTGTCTCCTTACAAACGGGAAATTGGTTATGATTATGGAGATGAAGTCCCGATGGGTGGAGATGCC
AACTATCAGACATTTTGTGGGACATAG

Upstream 100 bases:

>100_bases
CACCAAACAAATTGAAAAAAGATTATGAAATAAAAGAGATCGATCGAACCTCTTACTAAAATTGAACTCAAAATCGAATG
CCAAGACAGGTCTAACAAGT

Downstream 100 bases:

>100_bases
TGGTAGATTGGAGATTTTCTAGTTTTGGAAGCATTTTCATAAAATGTAGTTTTTTCTAGATATACAAACTAAAGTCGAAG
GACTTTATTGGGAACGATGA

Product: putative signal peptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MPSLSFPSFPLVEATYTSLPNSFFQVTKPTPVTSPEVLFWNDALALEFQFSHWKKQEEATARFFSGSILPEGIEPFAQAY
AGHQFGHFTMLGDGRTIVMGEFKNKNGERFDFQWKGSGRTKYSRNGDGRATISAMVREYIMSEAMAGLRIPTTRSLAVVK
TGEAVLREDPQEGAVLTRVAKSHIRVGTFEYAYQALSLEELEALFLYTARRHAPDVLNTENPALAFLEFVMRRQVSLITN
WMRVGFIHGVMNTDNMSIAGETIDYGPCAFMNGFSAKRVFSSIDVNGRYAFSNQVGIAQWNLACLTNSLLPLLDPNQETA
IALAKTKLNELESWFHESYIRMLGEKIGFPNLTEKDLLLLQSLYQWMQDTEADFTNTFLVLEGVYSPKDTIYNDIRWKDW
VKLWKEEKTKQGIRDEDAISLMQKTNPSFVPRNHLVEMALANVHQGNTSVVDQFIERSLSPYKREIGYDYGDEVPMGGDA
NYQTFCGT

Sequences:

>Translated_488_residues
MPSLSFPSFPLVEATYTSLPNSFFQVTKPTPVTSPEVLFWNDALALEFQFSHWKKQEEATARFFSGSILPEGIEPFAQAY
AGHQFGHFTMLGDGRTIVMGEFKNKNGERFDFQWKGSGRTKYSRNGDGRATISAMVREYIMSEAMAGLRIPTTRSLAVVK
TGEAVLREDPQEGAVLTRVAKSHIRVGTFEYAYQALSLEELEALFLYTARRHAPDVLNTENPALAFLEFVMRRQVSLITN
WMRVGFIHGVMNTDNMSIAGETIDYGPCAFMNGFSAKRVFSSIDVNGRYAFSNQVGIAQWNLACLTNSLLPLLDPNQETA
IALAKTKLNELESWFHESYIRMLGEKIGFPNLTEKDLLLLQSLYQWMQDTEADFTNTFLVLEGVYSPKDTIYNDIRWKDW
VKLWKEEKTKQGIRDEDAISLMQKTNPSFVPRNHLVEMALANVHQGNTSVVDQFIERSLSPYKREIGYDYGDEVPMGGDA
NYQTFCGT
>Mature_487_residues
PSLSFPSFPLVEATYTSLPNSFFQVTKPTPVTSPEVLFWNDALALEFQFSHWKKQEEATARFFSGSILPEGIEPFAQAYA
GHQFGHFTMLGDGRTIVMGEFKNKNGERFDFQWKGSGRTKYSRNGDGRATISAMVREYIMSEAMAGLRIPTTRSLAVVKT
GEAVLREDPQEGAVLTRVAKSHIRVGTFEYAYQALSLEELEALFLYTARRHAPDVLNTENPALAFLEFVMRRQVSLITNW
MRVGFIHGVMNTDNMSIAGETIDYGPCAFMNGFSAKRVFSSIDVNGRYAFSNQVGIAQWNLACLTNSLLPLLDPNQETAI
ALAKTKLNELESWFHESYIRMLGEKIGFPNLTEKDLLLLQSLYQWMQDTEADFTNTFLVLEGVYSPKDTIYNDIRWKDWV
KLWKEEKTKQGIRDEDAISLMQKTNPSFVPRNHLVEMALANVHQGNTSVVDQFIERSLSPYKREIGYDYGDEVPMGGDAN
YQTFCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=390, Percent_Identity=36.1538461538462, Blast_Score=213, Evalue=3e-55,
Organism=Escherichia coli, GI1787999, Length=453, Percent_Identity=34.2163355408389, Blast_Score=253, Evalue=3e-68,
Organism=Saccharomyces cerevisiae, GI6325034, Length=332, Percent_Identity=31.3253012048193, Blast_Score=145, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55295; Mature: 55164

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLSFPSFPLVEATYTSLPNSFFQVTKPTPVTSPEVLFWNDALALEFQFSHWKKQEEAT
CCCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCEEEECCEEEEEEEHHHHHHHHHHH
ARFFSGSILPEGIEPFAQAYAGHQFGHFTMLGDGRTIVMGEFKNKNGERFDFQWKGSGRT
HHHHCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCC
KYSRNGDGRATISAMVREYIMSEAMAGLRIPTTRSLAVVKTGEAVLREDPQEGAVLTRVA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCCHHHHHHH
KSHIRVGTFEYAYQALSLEELEALFLYTARRHAPDVLNTENPALAFLEFVMRRQVSLITN
HHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
WMRVGFIHGVMNTDNMSIAGETIDYGPCAFMNGFSAKRVFSSIDVNGRYAFSNQVGIAQW
HHHHHHHHHCCCCCCCEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCEEEECCCCCCEEE
NLACLTNSLLPLLDPNQETAIALAKTKLNELESWFHESYIRMLGEKIGFPNLTEKDLLLL
HHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
QSLYQWMQDTEADFTNTFLVLEGVYSPKDTIYNDIRWKDWVKLWKEEKTKQGIRDEDAIS
HHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
LMQKTNPSFVPRNHLVEMALANVHQGNTSVVDQFIERSLSPYKREIGYDYGDEVPMGGDA
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC
NYQTFCGT
CCCCCCCC
>Mature Secondary Structure 
PSLSFPSFPLVEATYTSLPNSFFQVTKPTPVTSPEVLFWNDALALEFQFSHWKKQEEAT
CCCCCCCCCCHHHHHHHCCCCCEEECCCCCCCCCCEEEECCEEEEEEEHHHHHHHHHHH
ARFFSGSILPEGIEPFAQAYAGHQFGHFTMLGDGRTIVMGEFKNKNGERFDFQWKGSGRT
HHHHCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCCEEEEEECCCCCC
KYSRNGDGRATISAMVREYIMSEAMAGLRIPTTRSLAVVKTGEAVLREDPQEGAVLTRVA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCCHHHHHHH
KSHIRVGTFEYAYQALSLEELEALFLYTARRHAPDVLNTENPALAFLEFVMRRQVSLITN
HHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
WMRVGFIHGVMNTDNMSIAGETIDYGPCAFMNGFSAKRVFSSIDVNGRYAFSNQVGIAQW
HHHHHHHHHCCCCCCCEECCCCCCCCCHHHHCCCHHHHHHHHCCCCCEEEECCCCCCEEE
NLACLTNSLLPLLDPNQETAIALAKTKLNELESWFHESYIRMLGEKIGFPNLTEKDLLLL
HHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
QSLYQWMQDTEADFTNTFLVLEGVYSPKDTIYNDIRWKDWVKLWKEEKTKQGIRDEDAIS
HHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
LMQKTNPSFVPRNHLVEMALANVHQGNTSVVDQFIERSLSPYKREIGYDYGDEVPMGGDA
HHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCC
NYQTFCGT
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA