| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is cobT [H]
Identifier: 182680326
GI number: 182680326
Start: 3888656
End: 3890578
Strand: Reverse
Name: cobT [H]
Synonym: Bind_3426
Alternate gene names: 182680326
Gene position: 3890578-3888656 (Counterclockwise)
Preceding gene: 182680327
Following gene: 182680322
Centisome position: 93.3
GC content: 61.62
Gene sequence:
>1923_bases ATGAGCTCGAACCAGAAGCCCCCCACCAAGATCGAAAGTCCGCAAGAGCCCTTCAAGCGCGCGGTTGCCAGCTGTATGCG CGCGCTCGCCGGCGCGCCGCAGCTCGAGGTCACCTATGCGCCGGAAAAGCCGAGCCTGATCCAGAGTGGCGCGGTGGTGC GCGCCCGTCTGCCTGATCTGCCGCGCAAATTCGACAAGCGTGAGGTCGCGGTGCTGCGCGGCCAAGCCGATGCCATGGCT TTGCGTCTAGCCTGCCACGACAATGAGTTGCATCGCCGCCTGATGCCGCAATCCTCCTCCGCCCGCGCCGTCTTCGATGC CGTCGAACAGGCCCGTGTCGAGGCCATTGGCTCGCGGCGGATGGCGGGCGTGTCCGCCAATCTCAATGCCATGCTCGAGG AGCGTTTTCAGCGCGGGCGCTATGCTGAGATCACCAACCAGGCCGATGCGCCGATCGAGGAAGCCCTGGCGCTCATGGTG CGGGAACGGCTGACCGGTCTAAAGCCTCCAAAACAAGCGCAGACGATCGTCGATCTCTGGCGGCCCTTCGTGGAAGGGAA GGCTGGAGCCGATCTCGACAAGCTCGGTGATACGATCGAGGATCAGCGCGCCTTCGCCCATTCGATTCACAAGCTCCTGA CCTCGCTTGACATGGCTGAGGAAGGCCAGTCCCCGGATGAAATGGACGAGGAAGATTCTAATGAGCAGGAGCAGGACGCC AACCAGGAGAATATGAGCCAGGAAAGCTCCGACGAGACCATGGGCGATATCGGGCAGCAGCAGCAATCCGATGCGCAGCC CCAAAGCATGGAAGAGGGCGAGTTCGAGGAGACCGAGGCGCAGACTGGCGACTTCGAGGAAGAAAGCGATTATTCGGAAG CCGAGGAGGCCGGCGATCCGCGCCGCCCGCCGACGTCCCAGCGTGCCGAGCCGAAGGGCTTCGAATACAAGCCCTTCACG CGGCGTTATGACGAGACCATTGCCGCCGAGGATCTGTGTGAGGCGGAGGAATTGGAACGCCTGCGCGCCTATCTCGACAA GCAATTGCAGAATCTCTCCTCGGTCGTGGCGCGGCTCGCCAATCGCCTGCAGCGCCGGCTCATGGCGCAGCAGAATCGAT CCTGGGAATTCGATCTTGAGGAAGGCATGCTCGATCCGGCACGCCTGCCGCGCGTCATCATCGATCCGCAACAGCCTTTA TCCTTCAAGCAGGAAAAGGACACCGACTTCCGTGATACGGTCGTGACGCTTCTGCTCGACAATTCGGGTTCGATGCGCGG CCGCCCAATCACCGTTGCCGCGACCTGCGCCGATATTCTGGCGCGCACGCTGGAGCGTTGCGGCGTCAAGGTCGAGATTT TGGGCTTTACCACGCGGGCCTGGAAGGGCGGGCAATCTCGCGAGGCCTGGCTGCATGCGGGCAAGCCGCCGATGCCCGGC CGTCTCAATGATCTGCGCCACATCATCTATAAATCCGCCGACGCGCCCTGGCGGCGAGCCCGAAAGAATCTCGGCCTGAT GATGCGCGAGGGGCTGCTCAAGGAAAATATCGACGGCGAGGCTTTGGACTGGGCGCATAAGCGCCTTTTGGCTCGGCCAG AGCAACGCAAGATTTTGATGATGATTTCCGATGGCGCGCCAGTCGATGATTCGACTCTCTCGGTCAATCCGGGCAATTTC CTCGAGAAACATCTGCGCCAGATGATTGAGGAGATCGAGACGCGCTCACCGGTGGAACTGATCGCCATCGGCATCGGCCA TGACGTCACGCGCTATTATCGCCGGGCCGTGACGATCGTCGATGCCGAAGAACTCGGCGGCGCCATGACCGAGAAACTCG CCGAATTGTTCAGCGAAAAGGCCGAGCCGAAAAAGTTTGCGTCATCGCCGCGCAAGATGCTGGTGCCGTCTTCTCTTCAT TGA
Upstream 100 bases:
>100_bases TTCGTTTTCGGCCCGCCCGCACGCGATGGATGGCATGGGTCGGCAGGTCGGCCAAGGCCGGCAAGGACCGGATCACCCCA AAAAAGGGTCAGGAAGCTCC
Downstream 100 bases:
>100_bases AACAAAGAAAGCCCGAAGAGGATCGCTCTTCGGGCTTTATGATCTCTTTGAACAGAGAACGGAACCGCTTAGGTTTCCGT CTCTTATTGGGCTGCCGCGG
Product: cobalt chelatase, pCobT subunit
Products: NA
Alternate protein names: Hydrogenobyrinic acid a,c-diamide cobaltochelatase subunit CobT [H]
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MSSNQKPPTKIESPQEPFKRAVASCMRALAGAPQLEVTYAPEKPSLIQSGAVVRARLPDLPRKFDKREVAVLRGQADAMA LRLACHDNELHRRLMPQSSSARAVFDAVEQARVEAIGSRRMAGVSANLNAMLEERFQRGRYAEITNQADAPIEEALALMV RERLTGLKPPKQAQTIVDLWRPFVEGKAGADLDKLGDTIEDQRAFAHSIHKLLTSLDMAEEGQSPDEMDEEDSNEQEQDA NQENMSQESSDETMGDIGQQQQSDAQPQSMEEGEFEETEAQTGDFEEESDYSEAEEAGDPRRPPTSQRAEPKGFEYKPFT RRYDETIAAEDLCEAEELERLRAYLDKQLQNLSSVVARLANRLQRRLMAQQNRSWEFDLEEGMLDPARLPRVIIDPQQPL SFKQEKDTDFRDTVVTLLLDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLHAGKPPMPG RLNDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLARPEQRKILMMISDGAPVDDSTLSVNPGNF LEKHLRQMIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDAEELGGAMTEKLAELFSEKAEPKKFASSPRKMLVPSSLH
Sequences:
>Translated_640_residues MSSNQKPPTKIESPQEPFKRAVASCMRALAGAPQLEVTYAPEKPSLIQSGAVVRARLPDLPRKFDKREVAVLRGQADAMA LRLACHDNELHRRLMPQSSSARAVFDAVEQARVEAIGSRRMAGVSANLNAMLEERFQRGRYAEITNQADAPIEEALALMV RERLTGLKPPKQAQTIVDLWRPFVEGKAGADLDKLGDTIEDQRAFAHSIHKLLTSLDMAEEGQSPDEMDEEDSNEQEQDA NQENMSQESSDETMGDIGQQQQSDAQPQSMEEGEFEETEAQTGDFEEESDYSEAEEAGDPRRPPTSQRAEPKGFEYKPFT RRYDETIAAEDLCEAEELERLRAYLDKQLQNLSSVVARLANRLQRRLMAQQNRSWEFDLEEGMLDPARLPRVIIDPQQPL SFKQEKDTDFRDTVVTLLLDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLHAGKPPMPG RLNDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLARPEQRKILMMISDGAPVDDSTLSVNPGNF LEKHLRQMIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDAEELGGAMTEKLAELFSEKAEPKKFASSPRKMLVPSSLH >Mature_639_residues SSNQKPPTKIESPQEPFKRAVASCMRALAGAPQLEVTYAPEKPSLIQSGAVVRARLPDLPRKFDKREVAVLRGQADAMAL RLACHDNELHRRLMPQSSSARAVFDAVEQARVEAIGSRRMAGVSANLNAMLEERFQRGRYAEITNQADAPIEEALALMVR ERLTGLKPPKQAQTIVDLWRPFVEGKAGADLDKLGDTIEDQRAFAHSIHKLLTSLDMAEEGQSPDEMDEEDSNEQEQDAN QENMSQESSDETMGDIGQQQQSDAQPQSMEEGEFEETEAQTGDFEEESDYSEAEEAGDPRRPPTSQRAEPKGFEYKPFTR RYDETIAAEDLCEAEELERLRAYLDKQLQNLSSVVARLANRLQRRLMAQQNRSWEFDLEEGMLDPARLPRVIIDPQQPLS FKQEKDTDFRDTVVTLLLDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLHAGKPPMPGR LNDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLARPEQRKILMMISDGAPVDDSTLSVNPGNFL EKHLRQMIEEIETRSPVELIAIGIGHDVTRYYRRAVTIVDAEELGGAMTEKLAELFSEKAEPKKFASSPRKMLVPSSLH
Specific function: Catalyzes cobalt insertion in the corrin ring [H]
COG id: COG4547
COG function: function code H; Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase)
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VWFA domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006538 - InterPro: IPR002035 [H]
Pfam domain/function: PF06213 CobT [H]
EC number: =6.6.1.2 [H]
Molecular weight: Translated: 72010; Mature: 71879
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNQKPPTKIESPQEPFKRAVASCMRALAGAPQLEVTYAPEKPSLIQSGAVVRARLPDL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCHHHHCCCC PRKFDKREVAVLRGQADAMALRLACHDNELHRRLMPQSSSARAVFDAVEQARVEAIGSRR HHHHCCHHHHHHCCCHHHHEEHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH MAGVSANLNAMLEERFQRGRYAEITNQADAPIEEALALMVRERLTGLKPPKQAQTIVDLW HCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RPFVEGKAGADLDKLGDTIEDQRAFAHSIHKLLTSLDMAEEGQSPDEMDEEDSNEQEQDA HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC NQENMSQESSDETMGDIGQQQQSDAQPQSMEEGEFEETEAQTGDFEEESDYSEAEEAGDP CHHHCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCC RRPPTSQRAEPKGFEYKPFTRRYDETIAAEDLCEAEELERLRAYLDKQLQNLSSVVARLA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NRLQRRLMAQQNRSWEFDLEEGMLDPARLPRVIIDPQQPLSFKQEKDTDFRDTVVTLLLD HHHHHHHHHHHCCCCCCCHHHCCCCHHHCCEEEECCCCCCCCCCCCCCCHHHHEEEEEEC NSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLHAGKPPMPG CCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCHHHHCCCCCCCCC RLNDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLARPEQRKILM HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEE MISDGAPVDDSTLSVNPGNFLEKHLRQMIEEIETRSPVELIAIGIGHDVTRYYRRAVTIV EEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHEE DAEELGGAMTEKLAELFSEKAEPKKFASSPRKMLVPSSLH EHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SSNQKPPTKIESPQEPFKRAVASCMRALAGAPQLEVTYAPEKPSLIQSGAVVRARLPDL CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHCCCCHHHHCCCC PRKFDKREVAVLRGQADAMALRLACHDNELHRRLMPQSSSARAVFDAVEQARVEAIGSRR HHHHCCHHHHHHCCCHHHHEEHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH MAGVSANLNAMLEERFQRGRYAEITNQADAPIEEALALMVRERLTGLKPPKQAQTIVDLW HCCCCCHHHHHHHHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RPFVEGKAGADLDKLGDTIEDQRAFAHSIHKLLTSLDMAEEGQSPDEMDEEDSNEQEQDA HHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC NQENMSQESSDETMGDIGQQQQSDAQPQSMEEGEFEETEAQTGDFEEESDYSEAEEAGDP CHHHCCHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCC RRPPTSQRAEPKGFEYKPFTRRYDETIAAEDLCEAEELERLRAYLDKQLQNLSSVVARLA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NRLQRRLMAQQNRSWEFDLEEGMLDPARLPRVIIDPQQPLSFKQEKDTDFRDTVVTLLLD HHHHHHHHHHHCCCCCCCHHHCCCCHHHCCEEEECCCCCCCCCCCCCCCHHHHEEEEEEC NSGSMRGRPITVAATCADILARTLERCGVKVEILGFTTRAWKGGQSREAWLHAGKPPMPG CCCCCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCCCCCCHHHHCCCCCCCCC RLNDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLARPEQRKILM HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEE MISDGAPVDDSTLSVNPGNFLEKHLRQMIEEIETRSPVELIAIGIGHDVTRYYRRAVTIV EEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHEE DAEELGGAMTEKLAELFSEKAEPKKFASSPRKMLVPSSLH EHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1917840 [H]