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The map label for this gene is cydB [H]

Identifier: 182680189

GI number: 182680189

Start: 3740052

End: 3741065

Strand: Reverse

Name: cydB [H]

Synonym: Bind_3287

Alternate gene names: 182680189

Gene position: 3741065-3740052 (Counterclockwise)

Preceding gene: 182680190

Following gene: 182680188

Centisome position: 89.71

GC content: 59.07

Gene sequence:

>1014_bases
ATGACCGGCTTGGAACCGTATCTGCCGTTGATCTGGGCCGGCATTCTGGCCACCGCCGTTGGCCTCTATGTCATTCTCGA
TGGATTCGATCTCGGTCTCGGCATTCTCTTCTTCACGACACGGGACGAGACCGCGCGCGATGACATGATGTCCTCCGTCG
CGCCTTTCTGGGACGGGAATGAAACCTGGCTGGTTTTAGGGGGCGGCGGTCTGCTCGCCGCCTTTCCGCTCGCCTATTCG
ATCATCATGCCGGCGCTCTATATTCCGATCATCCTGATGCTGCTCGCCTTGATCCTGCGTGGCGTCGCCTTTGAATTTCG
CTGGGCGGCAAAGCCCTGGCACGGATTCTGGGATGTCGCCTTTGCCGGGGGATCGACGCTTGCCGCCTTGGCGCAGGGAT
TCGTGCTGGGCGGTCTGATCCAGGGCATTACGGTCAAGGACAATGCCTTTGCCGGCGGTCCCTTCGATTGGTTCTCCCCT
TTTGCGCTCTTGTGCGGATTTGGCCTCGTCGCGGGTTATGGGCTGCTTGCCTGCTGCTGGCTGTTGATGAAGACCTCAGG
TGGGTTGGCTGCTCATGCGCGCCGCCTCGCGCTCCCCTTTCTGCTGGCCGTCGTCTTCTGCGCGGCCGTGGTAAGCATCT
GGACACCCTTGCGCTATCCAGCGATCGCGGAGCGTTGGTTCTCGACGCCTAATATTTTCTATCTCTGGCCTTTGCCGGCC
GCGACGGGGGCTCTGGCGTTTCTCGTTTTTCGCGCTCTGCGGCGGGGCGATGATTTCATCCCGTTCTTCGGCGTGGTGGG
GATTTTTCTACTCTGTTTCGCGGGTCTTGCTATTTCTGCTTATCCCTATCTGGTGCCGCACTCGATCGATCTCTGGCAGG
CCGCCGGCGCGCCTGAATCCCTGAAATTCATGCTCATCGGCGTCAGTATCCTCTTGCCGGTCATCTTGGGTTATACAATC
TTCGTTTATTGGACATTTCGGGGCCGTCTTCGGGTGGGAGAAGGCTATCATTAA

Upstream 100 bases:

>100_bases
AACAGGCCTGCCGTCCCGTCCTCTGTCCGGTGCTGCGAGAAGTCTGAGTGATTAAATCAACAACCGGCTGTTTCTGGGAT
GTTCGTTGGGAGAGAATGAC

Downstream 100 bases:

>100_bases
GGGGTGGACATTCGACCCCGTGATGGACTGAAGGACGAAACATGCGGGACACGGACAGGGGTGACACGAGCTTGCGGCCT
TTCCGTCCGCCTTCCGTCCA

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTGLEPYLPLIWAGILATAVGLYVILDGFDLGLGILFFTTRDETARDDMMSSVAPFWDGNETWLVLGGGGLLAAFPLAYS
IIMPALYIPIILMLLALILRGVAFEFRWAAKPWHGFWDVAFAGGSTLAALAQGFVLGGLIQGITVKDNAFAGGPFDWFSP
FALLCGFGLVAGYGLLACCWLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFSTPNIFYLWPLPA
ATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGLAISAYPYLVPHSIDLWQAAGAPESLKFMLIGVSILLPVILGYTI
FVYWTFRGRLRVGEGYH

Sequences:

>Translated_337_residues
MTGLEPYLPLIWAGILATAVGLYVILDGFDLGLGILFFTTRDETARDDMMSSVAPFWDGNETWLVLGGGGLLAAFPLAYS
IIMPALYIPIILMLLALILRGVAFEFRWAAKPWHGFWDVAFAGGSTLAALAQGFVLGGLIQGITVKDNAFAGGPFDWFSP
FALLCGFGLVAGYGLLACCWLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFSTPNIFYLWPLPA
ATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGLAISAYPYLVPHSIDLWQAAGAPESLKFMLIGVSILLPVILGYTI
FVYWTFRGRLRVGEGYH
>Mature_336_residues
TGLEPYLPLIWAGILATAVGLYVILDGFDLGLGILFFTTRDETARDDMMSSVAPFWDGNETWLVLGGGGLLAAFPLAYSI
IMPALYIPIILMLLALILRGVAFEFRWAAKPWHGFWDVAFAGGSTLAALAQGFVLGGLIQGITVKDNAFAGGPFDWFSPF
ALLCGFGLVAGYGLLACCWLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFSTPNIFYLWPLPAA
TGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGLAISAYPYLVPHSIDLWQAAGAPESLKFMLIGVSILLPVILGYTIF
VYWTFRGRLRVGEGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=346, Percent_Identity=29.4797687861272, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787213, Length=365, Percent_Identity=26.8493150684932, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36668; Mature: 36537

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLEPYLPLIWAGILATAVGLYVILDGFDLGLGILFFTTRDETARDDMMSSVAPFWDGN
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCC
ETWLVLGGGGLLAAFPLAYSIIMPALYIPIILMLLALILRGVAFEFRWAAKPWHGFWDVA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHH
FAGGSTLAALAQGFVLGGLIQGITVKDNAFAGGPFDWFSPFALLCGFGLVAGYGLLACCW
CCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFSTPNIFYLWPLPA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCH
ATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGLAISAYPYLVPHSIDLWQAAGAPES
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHH
LKFMLIGVSILLPVILGYTIFVYWTFRGRLRVGEGYH
HHHHHHHHHHHHHHHHHHHHHHEEEEECEEECCCCCC
>Mature Secondary Structure 
TGLEPYLPLIWAGILATAVGLYVILDGFDLGLGILFFTTRDETARDDMMSSVAPFWDGN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCC
ETWLVLGGGGLLAAFPLAYSIIMPALYIPIILMLLALILRGVAFEFRWAAKPWHGFWDVA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHH
FAGGSTLAALAQGFVLGGLIQGITVKDNAFAGGPFDWFSPFALLCGFGLVAGYGLLACCW
CCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFSTPNIFYLWPLPA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEECCCH
ATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGLAISAYPYLVPHSIDLWQAAGAPES
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHH
LKFMLIGVSILLPVILGYTIFVYWTFRGRLRVGEGYH
HHHHHHHHHHHHHHHHHHHHHHEEEEECEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]