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The map label for this gene is phyR [H]

Identifier: 182680142

GI number: 182680142

Start: 3682811

End: 3683518

Strand: Reverse

Name: phyR [H]

Synonym: Bind_3239

Alternate gene names: 182680142

Gene position: 3683518-3682811 (Counterclockwise)

Preceding gene: 182680146

Following gene: 182680138

Centisome position: 88.33

GC content: 59.46

Gene sequence:

>708_bases
TTGGGGAAGGGGGCTAAGGATGCGGCTGGCGCGGATTTGCGGGTTTCCCTTTATCGCCTGTTCTTGAAGGTTTGGGGCTC
AATGCCCGTCAATGAGCATGTCGATCAGTTTGAATTTGTAAGTGATGAACAGGGGGCGCGGCGCAATCTTGACGCCATTA
CCCTGCGTCCGCGCATCGCCTTTCTGCTGAGCGCGCTGGAAGGCTTCAAGACAGAAGAAGTGGCGCGCGCGCTCGATTGT
TCGACGCAGGAAGCGGCCAGTCTGATCGATACCGCGAGCAAGGAAATCACCCAGCAGATCCGCACCAATGTGTTGATCAT
CGAGGATGAGCCTTTCATCGCCCTCGATCTCCAGACATTGGTCGAGGAGCTCGGCCATCGCGTCGTCGGCGTGGCGCGCA
CACATCGTGAGGCCTTGGAAGCCGTGGCCAAGGAACGCCCCGGTCTCATTCTCGCCGATATCCAGCTCGCCGATGGCAGT
TCCGGCCTTGAGGCGGTCAATCAGATTCTTGGCGATTGTTCCGTTCCCGTGATTTTCATCACGGCTTATCCAGAACGGTT
CTTGACCGGGGCGCCGCCGGAGCCGGCCTTCCTCGTCACCAAGCCCTTTGGCGTCGATAGTCTTAAGGCCGTGATCAGCC
AGGCCTTGTTCTTCGATCGCAAATCACACCGCACGGGGATACCGCGGGCGCCGGTTGCGGTGGGGTGA

Upstream 100 bases:

>100_bases
CCTATCTGCGCCGGTTTTCCCGTGCCTTGAGCGGGATCAGGCCGGCGGCGATGCTTATGTCCTGGCAACGCTGGAGGCGA
TCGTCGCCGACCCTTCAGCC

Downstream 100 bases:

>100_bases
GCCTCATCCCAATTTGCGGCCTTTCGTGAAATAGAAACGCCCCGCGAAGAAGCCGGCGATCATGCCTGCAAGCACAAGCG
AATAGCCGTGCAATTGCTTG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MGKGAKDAAGADLRVSLYRLFLKVWGSMPVNEHVDQFEFVSDEQGARRNLDAITLRPRIAFLLSALEGFKTEEVARALDC
STQEAASLIDTASKEITQQIRTNVLIIEDEPFIALDLQTLVEELGHRVVGVARTHREALEAVAKERPGLILADIQLADGS
SGLEAVNQILGDCSVPVIFITAYPERFLTGAPPEPAFLVTKPFGVDSLKAVISQALFFDRKSHRTGIPRAPVAVG

Sequences:

>Translated_235_residues
MGKGAKDAAGADLRVSLYRLFLKVWGSMPVNEHVDQFEFVSDEQGARRNLDAITLRPRIAFLLSALEGFKTEEVARALDC
STQEAASLIDTASKEITQQIRTNVLIIEDEPFIALDLQTLVEELGHRVVGVARTHREALEAVAKERPGLILADIQLADGS
SGLEAVNQILGDCSVPVIFITAYPERFLTGAPPEPAFLVTKPFGVDSLKAVISQALFFDRKSHRTGIPRAPVAVG
>Mature_234_residues
GKGAKDAAGADLRVSLYRLFLKVWGSMPVNEHVDQFEFVSDEQGARRNLDAITLRPRIAFLLSALEGFKTEEVARALDCS
TQEAASLIDTASKEITQQIRTNVLIIEDEPFIALDLQTLVEELGHRVVGVARTHREALEAVAKERPGLILADIQLADGSS
GLEAVNQILGDCSVPVIFITAYPERFLTGAPPEPAFLVTKPFGVDSLKAVISQALFFDRKSHRTGIPRAPVAVG

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 25548; Mature: 25416

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKGAKDAAGADLRVSLYRLFLKVWGSMPVNEHVDQFEFVSDEQGARRNLDAITLRPRIA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCCEEEECHHHH
FLLSALEGFKTEEVARALDCSTQEAASLIDTASKEITQQIRTNVLIIEDEPFIALDLQTL
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHH
VEELGHRVVGVARTHREALEAVAKERPGLILADIQLADGSSGLEAVNQILGDCSVPVIFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEE
TAYPERFLTGAPPEPAFLVTKPFGVDSLKAVISQALFFDRKSHRTGIPRAPVAVG
EECCHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
GKGAKDAAGADLRVSLYRLFLKVWGSMPVNEHVDQFEFVSDEQGARRNLDAITLRPRIA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCCEEEECHHHH
FLLSALEGFKTEEVARALDCSTQEAASLIDTASKEITQQIRTNVLIIEDEPFIALDLQTL
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHH
VEELGHRVVGVARTHREALEAVAKERPGLILADIQLADGSSGLEAVNQILGDCSVPVIFI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEE
TAYPERFLTGAPPEPAFLVTKPFGVDSLKAVISQALFFDRKSHRTGIPRAPVAVG
EECCHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA