Click here to switch to the map view.

The map label for this gene is xylH [H]

Identifier: 182679976

GI number: 182679976

Start: 3507538

End: 3508728

Strand: Reverse

Name: xylH [H]

Synonym: Bind_3072

Alternate gene names: 182679976

Gene position: 3508728-3507538 (Counterclockwise)

Preceding gene: 182679977

Following gene: 182679975

Centisome position: 84.14

GC content: 52.48

Gene sequence:

>1191_bases
GTGAGCAACAAGACGATCGCACTCGGCGAGAAGCCTATCCACATCAGCTTTCTAAAAGACAATCTGCGTGAATATGGCAT
GCTGCTATCGCTGTTTGCCATCATGCTGTTTTTCGAAGTCATGACCCAGGGCACGTTGCTACGCCCACTCAATCTCACCA
ATCTTGTCCTGCAAAACAGCTATATTGTCATCATGGCGCTCGGGATGCTCCTGGTGATCGTGACTGGCCATATCGATCTT
TCGGTCGGCTCGGTGGCTGGGTTCATCGGCGCCGTGGCTGCCGTGCTCATGGTGCACTACCATCTGCCTTTCGTTCCTGC
CAGCCTCATCTGCCTCGTCCTTGGCGGCTTGATCGGCGCGGCACAGGGCTATTGGGTGGCTTATTTCAAAATTCCCTCCT
TCATTGTCACTTTGGCGGGAATGCTCGTCTTCAAAGGCCTGGCGCTGGCGATTCTACAAGGTCAGTCGGTCGGTCCTTTT
CCACAGACTTTTCAAAAACTGTCTTCTGGTTTCATTCCAGAAGTTTTCACTGACACCGGCACGCTCTATCCGACCTCTCT
CCTTATGGGTGCCGCTGTCGCTCTCGTGCTGGTCTATACGAACTACAAAAATCGGGCACGCCAGCTTAGCCATGACATCA
ATGTCGAACCCAATGGTTTTTTCATCTTCAAGAATCTGGTGCTCTTCGCGGTCGTTCTTTATTTTACCTATCTCATCGCT
TCGCACCGCGGCCTGCCCAATGTGCTCGTCATCATGATGGCGCTCATCGCACTCTATGGCTTCCTTACATCACGCACGAC
AATAGGTCGCCAGATCTATGCAATTGGTGGCAACGAGAAGGCTGCCAAGCTCTCAGGTATCAAGACCGAACGGCTGACGT
TTTTGACCTTTGTGAATATGGGCGTGCTCTCTGCGCTTGCCGGTCTTGTCTTTGCCGCGCGTCTCAATACCGCGACCCCG
AAGGCTGGTCTTGGTTTCGAGCTTGATGTCATAGCAGCTTGTTTCATTGGCGGCGCTTCGGCTTATGGCGGCGTTGGACG
CGTTACGGGAGCGGTGATCGGCGCGCTTATCATGGGTGTCATGAACAATGGCATGTCAATTCTTGGAATCGGGATCGATT
ATCAGCAAGTCATCAAGGGGCTTGTCCTTCTCGGTGCTGTCTGCTTTGATGTTTATAATCAGAAGCGATGA

Upstream 100 bases:

>100_bases
ACGTCATGAACGAAGGCGCCTTTGTCGGAGAATTCCCGACAGCGGAAGCCACACAAGAAAAAATCATGCGCTCCATCATG
CGCAAAGGGGAGAAACGGCA

Downstream 100 bases:

>100_bases
TTGTGCGTATCATTTGCTTTTCTGGATTACATTGGATGGTAACTTGTGCCGAGCGTTATGGCCATAGTAAGCTTTACGAA
AAAGATTCGCGGAGAAGCTG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSNKTIALGEKPIHISFLKDNLREYGMLLSLFAIMLFFEVMTQGTLLRPLNLTNLVLQNSYIVIMALGMLLVIVTGHIDL
SVGSVAGFIGAVAAVLMVHYHLPFVPASLICLVLGGLIGAAQGYWVAYFKIPSFIVTLAGMLVFKGLALAILQGQSVGPF
PQTFQKLSSGFIPEVFTDTGTLYPTSLLMGAAVALVLVYTNYKNRARQLSHDINVEPNGFFIFKNLVLFAVVLYFTYLIA
SHRGLPNVLVIMMALIALYGFLTSRTTIGRQIYAIGGNEKAAKLSGIKTERLTFLTFVNMGVLSALAGLVFAARLNTATP
KAGLGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCFDVYNQKR

Sequences:

>Translated_396_residues
MSNKTIALGEKPIHISFLKDNLREYGMLLSLFAIMLFFEVMTQGTLLRPLNLTNLVLQNSYIVIMALGMLLVIVTGHIDL
SVGSVAGFIGAVAAVLMVHYHLPFVPASLICLVLGGLIGAAQGYWVAYFKIPSFIVTLAGMLVFKGLALAILQGQSVGPF
PQTFQKLSSGFIPEVFTDTGTLYPTSLLMGAAVALVLVYTNYKNRARQLSHDINVEPNGFFIFKNLVLFAVVLYFTYLIA
SHRGLPNVLVIMMALIALYGFLTSRTTIGRQIYAIGGNEKAAKLSGIKTERLTFLTFVNMGVLSALAGLVFAARLNTATP
KAGLGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCFDVYNQKR
>Mature_395_residues
SNKTIALGEKPIHISFLKDNLREYGMLLSLFAIMLFFEVMTQGTLLRPLNLTNLVLQNSYIVIMALGMLLVIVTGHIDLS
VGSVAGFIGAVAAVLMVHYHLPFVPASLICLVLGGLIGAAQGYWVAYFKIPSFIVTLAGMLVFKGLALAILQGQSVGPFP
QTFQKLSSGFIPEVFTDTGTLYPTSLLMGAAVALVLVYTNYKNRARQLSHDINVEPNGFFIFKNLVLFAVVLYFTYLIAS
HRGLPNVLVIMMALIALYGFLTSRTTIGRQIYAIGGNEKAAKLSGIKTERLTFLTFVNMGVLSALAGLVFAARLNTATPK
AGLGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCFDVYNQKR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=376, Percent_Identity=39.0957446808511, Blast_Score=239, Evalue=3e-64,
Organism=Escherichia coli, GI145693152, Length=162, Percent_Identity=41.9753086419753, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1790191, Length=153, Percent_Identity=43.7908496732026, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790524, Length=157, Percent_Identity=41.4012738853503, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1788896, Length=153, Percent_Identity=38.562091503268, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082395, Length=312, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787793, Length=136, Percent_Identity=37.5, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788471, Length=141, Percent_Identity=39.0070921985816, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787794, Length=141, Percent_Identity=26.9503546099291, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 42410; Mature: 42279

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNKTIALGEKPIHISFLKDNLREYGMLLSLFAIMLFFEVMTQGTLLRPLNLTNLVLQNS
CCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHCCC
YIVIMALGMLLVIVTGHIDLSVGSVAGFIGAVAAVLMVHYHLPFVPASLICLVLGGLIGA
HHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
AQGYWVAYFKIPSFIVTLAGMLVFKGLALAILQGQSVGPFPQTFQKLSSGFIPEVFTDTG
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHCCCC
TLYPTSLLMGAAVALVLVYTNYKNRARQLSHDINVEPNGFFIFKNLVLFAVVLYFTYLIA
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SHRGLPNVLVIMMALIALYGFLTSRTTIGRQIYAIGGNEKAAKLSGIKTERLTFLTFVNM
HCCCCHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHH
GVLSALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASAYGGVGRVTGAVIGALIMGV
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHH
MNNGMSILGIGIDYQQVIKGLVLLGAVCFDVYNQKR
HCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]