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The map label for this gene is cspC [C]

Identifier: 182679940

GI number: 182679940

Start: 3457454

End: 3457663

Strand: Reverse

Name: cspC [C]

Synonym: Bind_3035

Alternate gene names: 182679940

Gene position: 3457663-3457454 (Counterclockwise)

Preceding gene: 182679941

Following gene: 182679939

Centisome position: 82.91

GC content: 50.48

Gene sequence:

>210_bases
ATGGCTAACGGCACTGTTAAATGGTTTAATACCACAAAGGGTTATGGTTTCATTGCACCGCAAGACGGTAGCAAGGACGT
TTTCGTTCACATCTCCGCAGTCGAACGCTCTCAGCTGCGTGAGCTTGTTGAAGGTCAAGTCGTCTCCTATGAACTTCAAC
GCGATCAGCGCTCCGGCAAGGAAAGCGCCGTCAATCTGAGAGCGGCTTAA

Upstream 100 bases:

>100_bases
TTTCAGACTTCTCGCTCCATGCGCGGATCTTTCAAGCCGAACTTTCAGACTCGATGGCAGCCGGGCTCATCCGGTAAAAT
CTCAAGCTAATGGATCTGAA

Downstream 100 bases:

>100_bases
GGGCGACTCTCTGGATATCAATCATGATTATCCCTTCATTACCTTTCGAGGTAAGGTTGTCCGTCTGACGACGAATGGTG
CGGATGTACGGCTGAGCAAT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MANGTVKWFNTTKGYGFIAPQDGSKDVFVHISAVERSQLRELVEGQVVSYELQRDQRSGKESAVNLRAA

Sequences:

>Translated_69_residues
MANGTVKWFNTTKGYGFIAPQDGSKDVFVHISAVERSQLRELVEGQVVSYELQRDQRSGKESAVNLRAA
>Mature_68_residues
ANGTVKWFNTTKGYGFIAPQDGSKDVFVHISAVERSQLRELVEGQVVSYELQRDQRSGKESAVNLRAA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=53.8461538461538, Blast_Score=76, Evalue=4e-16,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=50.7692307692308, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI2367114, Length=54, Percent_Identity=53.7037037037037, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787839, Length=50, Percent_Identity=58, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1789979, Length=54, Percent_Identity=53.7037037037037, Blast_Score=69, Evalue=5e-14,
Organism=Escherichia coli, GI1787834, Length=54, Percent_Identity=50, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=39.0625, Blast_Score=63, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24658520, Length=64, Percent_Identity=43.75, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7672; Mature: 7540

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTVKWFNTTKGYGFIAPQDGSKDVFVHISAVERSQLRELVEGQVVSYELQRDQRSGK
CCCCEEEEEECCCCCEEECCCCCCCEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCC
ESAVNLRAA
CCEEEEECC
>Mature Secondary Structure 
ANGTVKWFNTTKGYGFIAPQDGSKDVFVHISAVERSQLRELVEGQVVSYELQRDQRSGK
CCCEEEEEECCCCCEEECCCCCCCEEEEEEECCCHHHHHHHHCCCEEEEEECCCCCCCC
ESAVNLRAA
CCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]