Click here to switch to the map view.

The map label for this gene is yafK [H]

Identifier: 182679828

GI number: 182679828

Start: 3322278

End: 3323915

Strand: Reverse

Name: yafK [H]

Synonym: Bind_2917

Alternate gene names: 182679828

Gene position: 3323915-3322278 (Counterclockwise)

Preceding gene: 182679829

Following gene: 182679826

Centisome position: 79.71

GC content: 61.97

Gene sequence:

>1638_bases
ATGCGTTTCAAAGCCGATTTCCTGTCCTGTTTCAATCTCTTCGCCAAATCTGTCCCGCCTTTCCCGCGCAAGGATGAGAG
GCGGGCGAAGCTGCCAGTTTCGCTTCTGTCCCTTTCCTTGATCGGCCTTTCGGCTTCCTTGCTCGCCGGGTGTGATGAGG
TCATGAGCCCGCCGGGACTGTCGAACGCGAGAGCCCATGCCCCCCTTTCACACAAAACTCTGACGCTCATGTCAGAACAT
GGCACGACCAGCGCGTCGCCTGTGCTGATTCGTACCTATAAGAAGGAAGCAGAGCTCGAAATCTGGAAAATGGGCGCGGA
TGGGCGTTACAAGCATCTCAAAACCTATCCGATGTGCCGCTGGTCGGGGCAACTCGGACCGAAGATGCGGGAGGGTGATC
GCCAGGTGCCGGAAGGGTTCTATGCGATCACGCCGGCGCAGATGCATCCCAATTCGCATTATTATCTGTCCTTTGACGTA
GGCTATCCCAATACGTTTGATCGCGCCTGGGGACGCAGCGGCGGCTCGATCATGGTGCATGGCGTATGTTCCTCGGCCGG
CTGTTTCTCGATGACCGATGAGCAGATCGAGGAAATCTATGCCATCGTCCGGGAAGGCTTCGCCGGCGGTCAGCGCGCCA
TTCAGATGCAGTCCTATCCCTTCCGCATGACGGCGGAAAACCTGGCGAAATACAGGCTCGATCCGAATATCGCCTTCTGG
CGGCAGCTGAAGGAAGGCGCCGATCATTTCGACCTCACCCGGCAGGAGGTGATCGTCGGCGTCTGCGACCGGCATTATAT
CTTCAATGCCTTGCCCGCTGGGGGATCTTTCGATCCGACAGGAGCGTGCCCGCCCGTGCACCGCAATGCCGAGGAAGCTG
CCGAGGTTGCCGCCCGCACGAAACGGGATGAGGAGAAAATCGCGGAATTTGCCGCGCGCGGTGTCAAGCCGGTGCATACG
GTCTACGCCGACGGCGGACAGCATCCGAGTTTCTCCACGCGGCAGGGTGAAGTCAGCCGGCCCGAGGCCCTGGCGCAGGC
GCCGGTGGATTATGACATGGACGAGGGGAAACCGAATCCCAAGAACAAGAAGGATAAGTTCCAGCCTGCTGTCGCGGCCC
CTGTGACCGGGCCGGCCGTTCCCACGCAAGCCATGGCGTCGGCCCAGCCGCAACCGGCAACGGCGGGAGGCTCAACCTCA
GGTCCAGCTTCTCCTGCGGTGTCTGCGGGTTCCCAGGCTCCAGCTCAAGCTGCGCAGGCAACGGCGCCAACGCAGCAAGC
CGAGGCAACGGGCAGTTCCTTCTTCAATATGGGACGTTTCTTCAACTGGAAATCAGCGGACAAGCCGACTGATACGCCTG
CGGATACGGCGGTTGGCAGTATCCAGCCCGCGGTCGCGCCGGCGTCGCCCGTCAATGCCAAGGTCGAGCCACCAGCCGCC
CCGGCTAAAACCGCGACCACGCAGCATCCGGCTCAGGCCGTGGTGCCTGCGCCGCGTCACAAGCCCGCGCCGGTTGCGCC
GTCCCCCGCCGCCGAGGCTGTCAAGCCAAAGCCCGAAGAGAAGACGGTGAAGGCCGCTTCACCCGTCGCTCAGGCGACGG
CAGAACTTGCGACCGTGGCGACTGTGACAGCGCACTAA

Upstream 100 bases:

>100_bases
CTGAAAACCAGCCCCCAAAGCATCGGCCAACATCGGAGCAAGGCGTCTTCCCGACAGCCGTTCGGGCCGCATGGAAGGCC
GGTCAATGAGTGTATCGCCG

Downstream 100 bases:

>100_bases
ATGGCCTGATGGGCTGACCCTTATAAACAAACAAAAGCGCGGCTCGAAGATCGAGCCGCGCTTTTGTTTTGAGAAGGACG
CAAGAGTCGGTCGTGACTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MRFKADFLSCFNLFAKSVPPFPRKDERRAKLPVSLLSLSLIGLSASLLAGCDEVMSPPGLSNARAHAPLSHKTLTLMSEH
GTTSASPVLIRTYKKEAELEIWKMGADGRYKHLKTYPMCRWSGQLGPKMREGDRQVPEGFYAITPAQMHPNSHYYLSFDV
GYPNTFDRAWGRSGGSIMVHGVCSSAGCFSMTDEQIEEIYAIVREGFAGGQRAIQMQSYPFRMTAENLAKYRLDPNIAFW
RQLKEGADHFDLTRQEVIVGVCDRHYIFNALPAGGSFDPTGACPPVHRNAEEAAEVAARTKRDEEKIAEFAARGVKPVHT
VYADGGQHPSFSTRQGEVSRPEALAQAPVDYDMDEGKPNPKNKKDKFQPAVAAPVTGPAVPTQAMASAQPQPATAGGSTS
GPASPAVSAGSQAPAQAAQATAPTQQAEATGSSFFNMGRFFNWKSADKPTDTPADTAVGSIQPAVAPASPVNAKVEPPAA
PAKTATTQHPAQAVVPAPRHKPAPVAPSPAAEAVKPKPEEKTVKAASPVAQATAELATVATVTAH

Sequences:

>Translated_545_residues
MRFKADFLSCFNLFAKSVPPFPRKDERRAKLPVSLLSLSLIGLSASLLAGCDEVMSPPGLSNARAHAPLSHKTLTLMSEH
GTTSASPVLIRTYKKEAELEIWKMGADGRYKHLKTYPMCRWSGQLGPKMREGDRQVPEGFYAITPAQMHPNSHYYLSFDV
GYPNTFDRAWGRSGGSIMVHGVCSSAGCFSMTDEQIEEIYAIVREGFAGGQRAIQMQSYPFRMTAENLAKYRLDPNIAFW
RQLKEGADHFDLTRQEVIVGVCDRHYIFNALPAGGSFDPTGACPPVHRNAEEAAEVAARTKRDEEKIAEFAARGVKPVHT
VYADGGQHPSFSTRQGEVSRPEALAQAPVDYDMDEGKPNPKNKKDKFQPAVAAPVTGPAVPTQAMASAQPQPATAGGSTS
GPASPAVSAGSQAPAQAAQATAPTQQAEATGSSFFNMGRFFNWKSADKPTDTPADTAVGSIQPAVAPASPVNAKVEPPAA
PAKTATTQHPAQAVVPAPRHKPAPVAPSPAAEAVKPKPEEKTVKAASPVAQATAELATVATVTAH
>Mature_545_residues
MRFKADFLSCFNLFAKSVPPFPRKDERRAKLPVSLLSLSLIGLSASLLAGCDEVMSPPGLSNARAHAPLSHKTLTLMSEH
GTTSASPVLIRTYKKEAELEIWKMGADGRYKHLKTYPMCRWSGQLGPKMREGDRQVPEGFYAITPAQMHPNSHYYLSFDV
GYPNTFDRAWGRSGGSIMVHGVCSSAGCFSMTDEQIEEIYAIVREGFAGGQRAIQMQSYPFRMTAENLAKYRLDPNIAFW
RQLKEGADHFDLTRQEVIVGVCDRHYIFNALPAGGSFDPTGACPPVHRNAEEAAEVAARTKRDEEKIAEFAARGVKPVHT
VYADGGQHPSFSTRQGEVSRPEALAQAPVDYDMDEGKPNPKNKKDKFQPAVAAPVTGPAVPTQAMASAQPQPATAGGSTS
GPASPAVSAGSQAPAQAAQATAPTQQAEATGSSFFNMGRFFNWKSADKPTDTPADTAVGSIQPAVAPASPVNAKVEPPAA
PAKTATTQHPAQAVVPAPRHKPAPVAPSPAAEAVKPKPEEKTVKAASPVAQATAELATVATVTAH

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1786418, Length=184, Percent_Identity=41.8478260869565, Blast_Score=170, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 58133; Mature: 58133

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKADFLSCFNLFAKSVPPFPRKDERRAKLPVSLLSLSLIGLSASLLAGCDEVMSPPGL
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCCCCC
SNARAHAPLSHKTLTLMSEHGTTSASPVLIRTYKKEAELEIWKMGADGRYKHLKTYPMCR
CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHCCCCCEE
WSGQLGPKMREGDRQVPEGFYAITPAQMHPNSHYYLSFDVGYPNTFDRAWGRSGGSIMVH
ECCCCCCCHHCCCCCCCCCEEEECCHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEE
GVCSSAGCFSMTDEQIEEIYAIVREGFAGGQRAIQMQSYPFRMTAENLAKYRLDPNIAFW
EECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHCCCCCHHHH
RQLKEGADHFDLTRQEVIVGVCDRHYIFNALPAGGSFDPTGACPPVHRNAEEAAEVAART
HHHHHCCCHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KRDEEKIAEFAARGVKPVHTVYADGGQHPSFSTRQGEVSRPEALAQAPVDYDMDEGKPNP
CCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
KNKKDKFQPAVAAPVTGPAVPTQAMASAQPQPATAGGSTSGPASPAVSAGSQAPAQAAQA
CCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
TAPTQQAEATGSSFFNMGRFFNWKSADKPTDTPADTAVGSIQPAVAPASPVNAKVEPPAA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
PAKTATTQHPAQAVVPAPRHKPAPVAPSPAAEAVKPKPEEKTVKAASPVAQATAELATVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHE
TVTAH
EEECC
>Mature Secondary Structure
MRFKADFLSCFNLFAKSVPPFPRKDERRAKLPVSLLSLSLIGLSASLLAGCDEVMSPPGL
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCHHHCCCCCC
SNARAHAPLSHKTLTLMSEHGTTSASPVLIRTYKKEAELEIWKMGADGRYKHLKTYPMCR
CCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCHHHCCCCCEE
WSGQLGPKMREGDRQVPEGFYAITPAQMHPNSHYYLSFDVGYPNTFDRAWGRSGGSIMVH
ECCCCCCCHHCCCCCCCCCEEEECCHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCEEEE
GVCSSAGCFSMTDEQIEEIYAIVREGFAGGQRAIQMQSYPFRMTAENLAKYRLDPNIAFW
EECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHCCCCCHHHH
RQLKEGADHFDLTRQEVIVGVCDRHYIFNALPAGGSFDPTGACPPVHRNAEEAAEVAART
HHHHHCCCHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KRDEEKIAEFAARGVKPVHTVYADGGQHPSFSTRQGEVSRPEALAQAPVDYDMDEGKPNP
CCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
KNKKDKFQPAVAAPVTGPAVPTQAMASAQPQPATAGGSTSGPASPAVSAGSQAPAQAAQA
CCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
TAPTQQAEATGSSFFNMGRFFNWKSADKPTDTPADTAVGSIQPAVAPASPVNAKVEPPAA
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
PAKTATTQHPAQAVVPAPRHKPAPVAPSPAAEAVKPKPEEKTVKAASPVAQATAELATVA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHE
TVTAH
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]