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The map label for this gene is ycfQ [H]

Identifier: 182679804

GI number: 182679804

Start: 3298173

End: 3298757

Strand: Reverse

Name: ycfQ [H]

Synonym: Bind_2892

Alternate gene names: 182679804

Gene position: 3298757-3298173 (Counterclockwise)

Preceding gene: 182679806

Following gene: 182679803

Centisome position: 79.1

GC content: 63.59

Gene sequence:

>585_bases
ATGGCCAGACCTCGGGAATTCGATCGCGATGCCGCCCTGGACCGAGCTATTGGTGTGTTCTGGGGCAAGGGCTATGCCGC
TACCTCCACCGAAGAACTCGTGGAGGCGATGGGGATCGGGCGCCAAAGCCTTTACAACGCCTTCGGGGACAAGCGGCATC
TCTTTCTCGAAGCGCTTGGAGTCTATCACCGTCGGACCATCGCCGCACACTTACAGCGCTTGAGCGAACCCGTCTCCCCT
GTGGAGGGCATTCTCAATCTGTTGATCGGTCTCATCCCGGACGATGACAACCAGCGCTCAATGGGATGCATGGGCATCGG
CACGGTTAGCGAATTTGGCGCCTCCGACCCCGATATCTGCGCTCTCGGCGCAAGGGCACTGCCGCCCCTGACGACCCGCC
TTGCTGCGCGGATCCGGGAAGGCCAGGCGCTCGGGGAGCTGGACCCGCATCTCGACCCCGATGAGGCTGCGGGCTTCGTT
CACCTCCAGATGACCGGAATCCAGCTCGGCGCTCGGGGCGGTGTTGACGCGGATGCGCTTCGGGCAATGGTGCGGTTCGC
CGTCGATCGGCTTCGGGCAAGCTAG

Upstream 100 bases:

>100_bases
GATCTGGTGCCATCCGCACATTTCTAATGGAACCTCTTTGACAACCCCGCCAGCGTCAGTTATGGATTGATCGATCAATA
ATGGCGCTGCTTCAAACCAA

Downstream 100 bases:

>100_bases
GAAATCACATCGCCATGAACAATCGCGCTCAATTATGGACTTATCGATCAATAATATGGAGTATTCAATGAGCGTGACTG
AAAAAACAGCCCTAGTGTTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MARPREFDRDAALDRAIGVFWGKGYAATSTEELVEAMGIGRQSLYNAFGDKRHLFLEALGVYHRRTIAAHLQRLSEPVSP
VEGILNLLIGLIPDDDNQRSMGCMGIGTVSEFGASDPDICALGARALPPLTTRLAARIREGQALGELDPHLDPDEAAGFV
HLQMTGIQLGARGGVDADALRAMVRFAVDRLRAS

Sequences:

>Translated_194_residues
MARPREFDRDAALDRAIGVFWGKGYAATSTEELVEAMGIGRQSLYNAFGDKRHLFLEALGVYHRRTIAAHLQRLSEPVSP
VEGILNLLIGLIPDDDNQRSMGCMGIGTVSEFGASDPDICALGARALPPLTTRLAARIREGQALGELDPHLDPDEAAGFV
HLQMTGIQLGARGGVDADALRAMVRFAVDRLRAS
>Mature_193_residues
ARPREFDRDAALDRAIGVFWGKGYAATSTEELVEAMGIGRQSLYNAFGDKRHLFLEALGVYHRRTIAAHLQRLSEPVSPV
EGILNLLIGLIPDDDNQRSMGCMGIGTVSEFGASDPDICALGARALPPLTTRLAARIREGQALGELDPHLDPDEAAGFVH
LQMTGIQLGARGGVDADALRAMVRFAVDRLRAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=181, Percent_Identity=33.7016574585635, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20935; Mature: 20804

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPREFDRDAALDRAIGVFWGKGYAATSTEELVEAMGIGRQSLYNAFGDKRHLFLEALG
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
VYHRRTIAAHLQRLSEPVSPVEGILNLLIGLIPDDDNQRSMGCMGIGTVSEFGASDPDIC
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHCCCCCCHH
ALGARALPPLTTRLAARIREGQALGELDPHLDPDEAAGFVHLQMTGIQLGARGGVDADAL
HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEEEECEEECCCCCCCHHHH
RAMVRFAVDRLRAS
HHHHHHHHHHHHCC
>Mature Secondary Structure 
ARPREFDRDAALDRAIGVFWGKGYAATSTEELVEAMGIGRQSLYNAFGDKRHLFLEALG
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHH
VYHRRTIAAHLQRLSEPVSPVEGILNLLIGLIPDDDNQRSMGCMGIGTVSEFGASDPDIC
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHCCCCCCHH
ALGARALPPLTTRLAARIREGQALGELDPHLDPDEAAGFVHLQMTGIQLGARGGVDADAL
HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCEEEEEEECEEECCCCCCCHHHH
RAMVRFAVDRLRAS
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]