| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is fliF [H]
Identifier: 182679604
GI number: 182679604
Start: 3063669
End: 3065312
Strand: Reverse
Name: fliF [H]
Synonym: Bind_2689
Alternate gene names: 182679604
Gene position: 3065312-3063669 (Counterclockwise)
Preceding gene: 182679605
Following gene: 182679603
Centisome position: 73.51
GC content: 55.23
Gene sequence:
>1644_bases ATGACCGTTCGAGAACAAATCGAGCGTCTCTGGGCGAATTTGCTGAAGCTTGGCACGAAGCGTCTGATCACGCTTGCGGT CGTCGGCGTTTCTGTTTTCGCAATGACGGGATTAGCCGGATATTTCCTGAGTCGGCCGGCGCTCGAGGTCCTCTATTCTG GCCTGGACAGGCAGGACGTCAGCCGGATCGCTTCCGCTCTCAAGGAGGCGGATATTCCTTTTGATGTCAATGCTGACGGC AATAGCGTGCTGGTTCGCTTCGGGGAAACGGCGAGAGCGCGCATGCTCCTAGCGGAAAAAGGTCTGCCCAATAGCCCGAA CGCTGGCAATGAACTGTTCGACAAGCTCGGATCTTTGGGACTGACGTCGTTCATGCAGGAAGTGACCCGTGTGCGCGCCC TCGAAGGGGAATTGGCCCGGACGATCCAGCTCATGCATGGCGTGAAAGCGGCGCGCGTTCATATCGTCATGCCGGATGAA GGCTCTTTTCGCCGGACACGTCAACCTCCCTCAGCTTCGGTCGTCGTACGAATGGAGTCGAACGATGATCCGAGTGCGGC AAAGGCGATTCGTCATCTTGTCGCATCCGCCGTCCCGGGCATGACGGTTGAAGAGGTCACGGTTCTGAATACGGAGGGTG TGCTGCTCGCATCTGGAGCCGATACAGTCGATGGCGCTCCCAGCGGCATGATCATGCTCGAAAAGGCGGTCTCTCGGGAA ATCATTGATAATATCAGAAAGACTCTGACGCCTTATTTGGGTCTACGCAATTTCCAGATCAGCGTCGCGGCTCGTCTCAA CACCGATAAGCGACAGACGAATGAAACGATCTACAATCCCGATTCGAAGGTCGAACGTTCCATTCACGTCACAAGGCAGA ATCAGAATTCACAGAACTCCACGGTCCAATCCCCGACATCGGTCGAACGCAATCTTCCTCAGGAAAATGCACGGTCCGAT GATGGCAAGCAATCGACTGAGGAAAGCCAGAAACGGGATGAACTGACCAATTATGAAATCTCTTCAAAAGTGGTCAATAC CGTCAGCGGCGGCTATGGAATCGACAATCTGTCCGTGGCGGTCCTTGTCAATCGCGCGAGCTTGATCTCCTCCCTGGGTG AAAAGCCCACGCCGGACGCGTTAGCCAAGCAGATGAACGAAATTGAGATGTTGGTCGCATCAGCGGCGGGTGCTCATAAG GAGCGAGGAGACATCGTCAAAATTTCGGCTGTGGACTTTATCGATCCAAGTCATGAACTCGAGCCGCAGCCGCCGCCATC CATCGGTGAAATGTTCCTGCGTCAGTCCACCAATCTCGTCAACGCGGCCACGATCCTCGTTGTGGCGATCCTCCTCATCT GGTTCGGCTTGCGTCCGGCAACCAAGGCCATTCTGGCGAATACACGAAGCACCGCGACAGCGATCGATCTGAGAGATGAG GAAGAATTCCAAGCCTTGGAGGATGATGACGCACCGCCGGCCTTGCCTGTCTGGTCGCCGCCTTCTGAACCCAATCTTAT CGAGGATTTGACCAGTACGCCAAGACACACACCTCAGAAGCGGCTCGAACAGATCGTCGAGTATGACGAGCAGCAAGCGG CCGCTGTCTTAAAGCAGTGGATTCACCAAGGGGAAGAAGTATGA
Upstream 100 bases:
>100_bases GCCGCGCTCTTCAGAGCGCGGCCTTTTTCATGATCATATTCAGGCAAGCTTCACCCTGCATCTTCAGTCAAGTTTTATCC ATAGAGGATTGAGGGGGCAC
Downstream 100 bases:
>100_bases ATACGCGGCCCGTCAGTGAATTCCTCCGAGACTTTAACGCGCTTGAAATAAAAAATAATAGTGGCGGCTCCGCTGGCGTG CTGGAGCATGACGTGAATAT
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDVSRIASALKEADIPFDVNADG NSVLVRFGETARARMLLAEKGLPNSPNAGNELFDKLGSLGLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDE GSFRRTRQPPSASVVVRMESNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSRE IIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQNSTVQSPTSVERNLPQENARSD DGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSVAVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHK ERGDIVKISAVDFIDPSHELEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRPATKAILANTRSTATAIDLRDE EEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDEQQAAAVLKQWIHQGEEV
Sequences:
>Translated_547_residues MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDVSRIASALKEADIPFDVNADG NSVLVRFGETARARMLLAEKGLPNSPNAGNELFDKLGSLGLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDE GSFRRTRQPPSASVVVRMESNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSRE IIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQNSTVQSPTSVERNLPQENARSD DGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSVAVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHK ERGDIVKISAVDFIDPSHELEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRPATKAILANTRSTATAIDLRDE EEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDEQQAAAVLKQWIHQGEEV >Mature_546_residues TVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDVSRIASALKEADIPFDVNADGN SVLVRFGETARARMLLAEKGLPNSPNAGNELFDKLGSLGLTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEG SFRRTRQPPSASVVVRMESNDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSREI IDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQNSTVQSPTSVERNLPQENARSDD GKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSVAVLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKE RGDIVKISAVDFIDPSHELEPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRPATKAILANTRSTATAIDLRDEE EFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDEQQAAAVLKQWIHQGEEV
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=432, Percent_Identity=30.5555555555556, Blast_Score=150, Evalue=2e-37,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 59773; Mature: 59642
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLPNSPNAGNELFDKLGSLG HHHHHHHHHCCCCEEECCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC LTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRMES HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECC NDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSRE CCCHHHHHHHHHHHHHHCCCCCCHHEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHH IIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQNS HHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCCCCCCCHHHHHHEEEEECCCCCCCC TVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSVA CCCCCHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHH VLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSHEL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCC EPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRPATKAILANTRSTATAIDLRDE CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCH EEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDEQQAAAVLKQW HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHH IHQGEEV HHCCCCC >Mature Secondary Structure TVREQIERLWANLLKLGTKRLITLAVVGVSVFAMTGLAGYFLSRPALEVLYSGLDRQDV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH SRIASALKEADIPFDVNADGNSVLVRFGETARARMLLAEKGLPNSPNAGNELFDKLGSLG HHHHHHHHHCCCCEEECCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC LTSFMQEVTRVRALEGELARTIQLMHGVKAARVHIVMPDEGSFRRTRQPPSASVVVRMES HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECC NDDPSAAKAIRHLVASAVPGMTVEEVTVLNTEGVLLASGADTVDGAPSGMIMLEKAVSRE CCCHHHHHHHHHHHHHHCCCCCCHHEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHH IIDNIRKTLTPYLGLRNFQISVAARLNTDKRQTNETIYNPDSKVERSIHVTRQNQNSQNS HHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCCCCCCCCCHHHHHHEEEEECCCCCCCC TVQSPTSVERNLPQENARSDDGKQSTEESQKRDELTNYEISSKVVNTVSGGYGIDNLSVA CCCCCHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHH VLVNRASLISSLGEKPTPDALAKQMNEIEMLVASAAGAHKERGDIVKISAVDFIDPSHEL HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCC EPQPPPSIGEMFLRQSTNLVNAATILVVAILLIWFGLRPATKAILANTRSTATAIDLRDE CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCH EEFQALEDDDAPPALPVWSPPSEPNLIEDLTSTPRHTPQKRLEQIVEYDEQQAAAVLKQW HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHH IHQGEEV HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11013709 [H]