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The map label for this gene is ycjO [C]

Identifier: 182679414

GI number: 182679414

Start: 2810343

End: 2811215

Strand: Reverse

Name: ycjO [C]

Synonym: Bind_2462

Alternate gene names: 182679414

Gene position: 2811215-2810343 (Counterclockwise)

Preceding gene: 182679415

Following gene: 182679413

Centisome position: 67.41

GC content: 55.78

Gene sequence:

>873_bases
ATGGCGACAGGACATACTCATTCCGCCGCGCGCCTGATGATGGCGCCTTCCGTGGTCCTCCTGTTGGCCTGGATGATCGT
GCCGCTGGCGATGACGGCCTATTTTTCCTTTCTGCGTTACAATTTGCTGATGCCAGGCGAGGAGGTGTTCACAAGCCTTG
CGAATTATCAGTTCTTCCTCACGGACCCAGCCTTCTTCTCCGCACTCATCAACACGCTGCTGATCGTTCTCGGTGTCCTC
GTCATAACCATCATCGGGGGCATCGGTTTTGCGCTTCTGCTCGATCAGCCGATGTTCGGGCAGGGGATCGTGCGTATTCT
GGTGATTGCGCCCTTCTTCGTCATGCCGACGGTCTCGGCGCTCGTGTGGAAGAACATGTTCATGAATCCGGTGAATGGTC
TGTTCGCCTGGATCGCCCGATCGCTTGGACTCGAGCCTTTTGACTGGCTGGCCAATGCACCGCTCTTATCGATCATCCTC
ATCATCGCCTGGCAATGGTTGCCTTTTGCGACCTTGATCCTGCTGACGGCCCTGCAATCTCTGAATGAGGAACAGAAAGA
AGCCGCCGAAATGGACGGTGCGGGACCAATCTCAAAGTTCATCTATATCATTCTGCCGCATATGGCCCGCGCCATCACGG
TCGTCATTCTCATTCAGACGATCTTTCTTCTCTCTATCTTCGCCGAAATTCTCGTCACCACCAATGGCGGACCCGGCGTG
GAGAGCACCAATCTCACTTTTCTCGTGTATACGCAGGCGCTTCTTCAGTTCGACATTGGCGGAGCCTCGGCGGGCGGCAT
TGTCGCCGTCGTGCTCGCCAATATCGTCGCCGTCTTCCTGATCCGCTTCGTCGGCAAGAATCTGGAGGCTTGA

Upstream 100 bases:

>100_bases
CGCGCGCTCGTAGCCTTTGACCATGCTGTCAACGGCTACGACGGCGCGCCAAGATAGCCCGCCCGCTTGGCATTCATTCA
ATTCTGATCCGGGGGTCGCC

Downstream 100 bases:

>100_bases
ATAATGGCACGCCAAGGCTCAGCCCGCCGTAAACTGGTCACGACCGTCATCGCATGGACGTTTGGCCTTGCGATCTTCTT
CCCGATCTTGTGGACCGTGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MATGHTHSAARLMMAPSVVLLLAWMIVPLAMTAYFSFLRYNLLMPGEEVFTSLANYQFFLTDPAFFSALINTLLIVLGVL
VITIIGGIGFALLLDQPMFGQGIVRILVIAPFFVMPTVSALVWKNMFMNPVNGLFAWIARSLGLEPFDWLANAPLLSIIL
IIAWQWLPFATLILLTALQSLNEEQKEAAEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSIFAEILVTTNGGPGV
ESTNLTFLVYTQALLQFDIGGASAGGIVAVVLANIVAVFLIRFVGKNLEA

Sequences:

>Translated_290_residues
MATGHTHSAARLMMAPSVVLLLAWMIVPLAMTAYFSFLRYNLLMPGEEVFTSLANYQFFLTDPAFFSALINTLLIVLGVL
VITIIGGIGFALLLDQPMFGQGIVRILVIAPFFVMPTVSALVWKNMFMNPVNGLFAWIARSLGLEPFDWLANAPLLSIIL
IIAWQWLPFATLILLTALQSLNEEQKEAAEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSIFAEILVTTNGGPGV
ESTNLTFLVYTQALLQFDIGGASAGGIVAVVLANIVAVFLIRFVGKNLEA
>Mature_289_residues
ATGHTHSAARLMMAPSVVLLLAWMIVPLAMTAYFSFLRYNLLMPGEEVFTSLANYQFFLTDPAFFSALINTLLIVLGVLV
ITIIGGIGFALLLDQPMFGQGIVRILVIAPFFVMPTVSALVWKNMFMNPVNGLFAWIARSLGLEPFDWLANAPLLSIILI
IAWQWLPFATLILLTALQSLNEEQKEAAEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSIFAEILVTTNGGPGVE
STNLTFLVYTQALLQFDIGGASAGGIVAVVLANIVAVFLIRFVGKNLEA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=279, Percent_Identity=27.5985663082437, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790465, Length=241, Percent_Identity=26.5560165975104, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789861, Length=283, Percent_Identity=24.0282685512367, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31577; Mature: 31446

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGHTHSAARLMMAPSVVLLLAWMIVPLAMTAYFSFLRYNLLMPGEEVFTSLANYQFFL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEE
TDPAFFSALINTLLIVLGVLVITIIGGIGFALLLDQPMFGQGIVRILVIAPFFVMPTVSA
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMNPVNGLFAWIARSLGLEPFDWLANAPLLSIILIIAWQWLPFATLILLTALQS
HHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEEQKEAAEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSIFAEILVTTNGGPGV
HCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ESTNLTFLVYTQALLQFDIGGASAGGIVAVVLANIVAVFLIRFVGKNLEA
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ATGHTHSAARLMMAPSVVLLLAWMIVPLAMTAYFSFLRYNLLMPGEEVFTSLANYQFFL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEE
TDPAFFSALINTLLIVLGVLVITIIGGIGFALLLDQPMFGQGIVRILVIAPFFVMPTVSA
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LVWKNMFMNPVNGLFAWIARSLGLEPFDWLANAPLLSIILIIAWQWLPFATLILLTALQS
HHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEEQKEAAEMDGAGPISKFIYIILPHMARAITVVILIQTIFLLSIFAEILVTTNGGPGV
HCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ESTNLTFLVYTQALLQFDIGGASAGGIVAVVLANIVAVFLIRFVGKNLEA
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]