Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 182679398

GI number: 182679398

Start: 2788618

End: 2789013

Strand: Reverse

Name: rpoZ

Synonym: Bind_2446

Alternate gene names: 182679398

Gene position: 2789013-2788618 (Counterclockwise)

Preceding gene: 182679401

Following gene: 182679397

Centisome position: 66.88

GC content: 59.85

Gene sequence:

>396_bases
ATGGCCCGCGTCACCGTTGAAGATTGCATCGACAAGGTCGAGAACCGCTTCGAACTCGTCCTGCTCGCCAGCCATCGTGC
CCGCCTCATTGCTTCCGGCACGCCGATCACGGTCGAACGTGACAATGACAAAAACCCGGTTGTTGCGCTGCGGGAAATCG
CCGATGAGACACTGACGCCGGAAGATCTCAAGGAGGATTTCATCCAATCCTTGCAGAAACATGTCGAGGTCGATGAGCCC
GAGGCCGAAGCCGTGCCGGCGCTCTCTTCAGCGCCCGATGCAGCGCAATCCGACGCCATGGGCGATGTTCAGTTCGATCG
CATGACTGAAGAAGACCTTTTGCGCGGCCTTGAGGGCCTGGTGCCGCCGGCCGCCACGGACGATGATGGGGAATAA

Upstream 100 bases:

>100_bases
TTGCCAAGCCGTGATCCGCGCGTGTAAGGGATACTACTTCCCAAGTTCGTCTCAAGCTTTTGTTGAAAAAGCAAGCTTGT
CCATCAGGAGAGTGCGCAGC

Downstream 100 bases:

>100_bases
TCTTCGATCCTTGCGGTTGGCGTATTATTCCTAACGCTTCGGGCCGGGAGCCTGATGCGAGGATGCCAGCCAAGAGGACA
GTGCGAAAAGGCGGTCTTGT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MARVTVEDCIDKVENRFELVLLASHRARLIASGTPITVERDNDKNPVVALREIADETLTPEDLKEDFIQSLQKHVEVDEP
EAEAVPALSSAPDAAQSDAMGDVQFDRMTEEDLLRGLEGLVPPAATDDDGE

Sequences:

>Translated_131_residues
MARVTVEDCIDKVENRFELVLLASHRARLIASGTPITVERDNDKNPVVALREIADETLTPEDLKEDFIQSLQKHVEVDEP
EAEAVPALSSAPDAAQSDAMGDVQFDRMTEEDLLRGLEGLVPPAATDDDGE
>Mature_130_residues
ARVTVEDCIDKVENRFELVLLASHRARLIASGTPITVERDNDKNPVVALREIADETLTPEDLKEDFIQSLQKHVEVDEPE
AEAVPALSSAPDAAQSDAMGDVQFDRMTEEDLLRGLEGLVPPAATDDDGE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_BEII9 (B2IIA1)

Other databases:

- EMBL:   CP001016
- RefSeq:   YP_001833544.1
- GeneID:   6200364
- GenomeReviews:   CP001016_GR
- KEGG:   bid:Bind_2446
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14340; Mature: 14209

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVENRFELVLLASHRARLIASGTPITVERDNDKNPVVALREIADETLTP
CCCCCHHHHHHHHHHHHEEEEECCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCH
EDLKEDFIQSLQKHVEVDEPEAEAVPALSSAPDAAQSDAMGDVQFDRMTEEDLLRGLEGL
HHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHCCCCCCHHHHCCHHHHHHHHHHC
VPPAATDDDGE
CCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVENRFELVLLASHRARLIASGTPITVERDNDKNPVVALREIADETLTP
CCCCHHHHHHHHHHHHEEEEECCCCCEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCH
EDLKEDFIQSLQKHVEVDEPEAEAVPALSSAPDAAQSDAMGDVQFDRMTEEDLLRGLEGL
HHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCHHHCCCCCCHHHHCCHHHHHHHHHHC
VPPAATDDDGE
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA