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The map label for this gene is 182679336

Identifier: 182679336

GI number: 182679336

Start: 2721601

End: 2722218

Strand: Reverse

Name: 182679336

Synonym: Bind_2382

Alternate gene names: NA

Gene position: 2722218-2721601 (Counterclockwise)

Preceding gene: 182679337

Following gene: 182679335

Centisome position: 65.28

GC content: 57.44

Gene sequence:

>618_bases
ATGCGAGTGCGCGTGACCGGGCGTTTTATTTTCTCAGGCTTGATCGCGGGCACGATCCTCGTTGGCGGTGTTTTTGCCTT
GGGCTCTGTGATGCGCAATGGTGGGCGTATGCATGCAGCCGATGCAGCCCATTTCGGTGGCCCTTTCGAACTCGTTGATC
AGAATGGTGCCGAGGTCACGCAGGCGCGGTTCAGCGGACGCCCTCTGGTTCTGTTCTTCGGCTACACGCATTGTCAGGAT
ATTTGCTCGACCGCGCTTGCCGATATGAGCCTATGGCAGGCGCAACTGGGCGACAAAGCCGCCTCGCTTCCCTTCGTTTT
CGTGACCGTCGATCCCGAACGCGATACGCCAGCCGTGCTGCATGACTATCTGCAGAATTTCGCGGGCCATTTCATCGGTT
TGAGTGGACGGGTGGATGCCGTCAAGAGCATGCTCGGCGAATATCATATTGCAAGCCTGCCCGTGGGCCGCTCCGACGGG
TCTTACGACCTCGACCATACAGGGGGGATTTTCCTGATCAATGGTGATGGCAGTCTCGCGGGGACGATCGCCTCTCATGA
TGATCTGGGAACCGGGCTTGCCAAAATTCGCAGACTTTTGTTGCGACAAATGAGCTGA

Upstream 100 bases:

>100_bases
ATCATGCTCGACTTCGAAGGTTGAGCTGACCTGCTAAAATGTTTAAACCTTCGCGGTGGATTTATTTTCTCCTTGGCCAC
CTGATCAGGGAAGATCGCCG

Downstream 100 bases:

>100_bases
CGGCCGAGAATTTGCGCTTCTTCCTGGTCGGTATCTGGATACGCCGATACCATCGTGTCATAATGCCCAGGCAATGCTTG
AAGGCCGAATGTCTTTCGCG

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MRVRVTGRFIFSGLIAGTILVGGVFALGSVMRNGGRMHAADAAHFGGPFELVDQNGAEVTQARFSGRPLVLFFGYTHCQD
ICSTALADMSLWQAQLGDKAASLPFVFVTVDPERDTPAVLHDYLQNFAGHFIGLSGRVDAVKSMLGEYHIASLPVGRSDG
SYDLDHTGGIFLINGDGSLAGTIASHDDLGTGLAKIRRLLLRQMS

Sequences:

>Translated_205_residues
MRVRVTGRFIFSGLIAGTILVGGVFALGSVMRNGGRMHAADAAHFGGPFELVDQNGAEVTQARFSGRPLVLFFGYTHCQD
ICSTALADMSLWQAQLGDKAASLPFVFVTVDPERDTPAVLHDYLQNFAGHFIGLSGRVDAVKSMLGEYHIASLPVGRSDG
SYDLDHTGGIFLINGDGSLAGTIASHDDLGTGLAKIRRLLLRQMS
>Mature_205_residues
MRVRVTGRFIFSGLIAGTILVGGVFALGSVMRNGGRMHAADAAHFGGPFELVDQNGAEVTQARFSGRPLVLFFGYTHCQD
ICSTALADMSLWQAQLGDKAASLPFVFVTVDPERDTPAVLHDYLQNFAGHFIGLSGRVDAVKSMLGEYHIASLPVGRSDG
SYDLDHTGGIFLINGDGSLAGTIASHDDLGTGLAKIRRLLLRQMS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=159, Percent_Identity=30.8176100628931, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI281182727, Length=151, Percent_Identity=33.112582781457, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI281182722, Length=151, Percent_Identity=33.112582781457, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI281182716, Length=151, Percent_Identity=33.112582781457, Blast_Score=82, Evalue=2e-16,
Organism=Homo sapiens, GI153791313, Length=151, Percent_Identity=33.112582781457, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17531419, Length=178, Percent_Identity=28.6516853932584, Blast_Score=84, Evalue=7e-17,
Organism=Saccharomyces cerevisiae, GI6319498, Length=197, Percent_Identity=34.5177664974619, Blast_Score=117, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6319511, Length=154, Percent_Identity=34.4155844155844, Blast_Score=103, Evalue=2e-23,
Organism=Drosophila melanogaster, GI19920710, Length=168, Percent_Identity=30.952380952381, Blast_Score=98, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21868; Mature: 21868

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVRVTGRFIFSGLIAGTILVGGVFALGSVMRNGGRMHAADAAHFGGPFELVDQNGAEVT
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCEEECCCCCHHH
QARFSGRPLVLFFGYTHCQDICSTALADMSLWQAQLGDKAASLPFVFVTVDPERDTPAVL
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
HDYLQNFAGHFIGLSGRVDAVKSMLGEYHIASLPVGRSDGSYDLDHTGGIFLINGDGSLA
HHHHHHHHHHHCCCCCCHHHHHHHHHCHHHEECCCCCCCCCCCCCCCCCEEEEECCCCEE
GTIASHDDLGTGLAKIRRLLLRQMS
EEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRVRVTGRFIFSGLIAGTILVGGVFALGSVMRNGGRMHAADAAHFGGPFELVDQNGAEVT
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHCCCCCEEECCCCCHHH
QARFSGRPLVLFFGYTHCQDICSTALADMSLWQAQLGDKAASLPFVFVTVDPERDTPAVL
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
HDYLQNFAGHFIGLSGRVDAVKSMLGEYHIASLPVGRSDGSYDLDHTGGIFLINGDGSLA
HHHHHHHHHHHCCCCCCHHHHHHHHHCHHHEECCCCCCCCCCCCCCCCCEEEEECCCCEE
GTIASHDDLGTGLAKIRRLLLRQMS
EEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]