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The map label for this gene is pupA [H]

Identifier: 182679283

GI number: 182679283

Start: 2662954

End: 2665326

Strand: Reverse

Name: pupA [H]

Synonym: Bind_2327

Alternate gene names: 182679283

Gene position: 2665326-2662954 (Counterclockwise)

Preceding gene: 182679284

Following gene: 182679282

Centisome position: 63.91

GC content: 51.41

Gene sequence:

>2373_bases
TTGAATCGGAAATCCGTTGTTAACGCGCGATCCAGTTTGCGGACACTGCTCCCTGATGCGCAATCTGTTTCCTTTCTTTT
ATCGGCTTCGATCCTTGCTTTAACGTGTGAGATGACGTGGGCGCAGGAAATGACGCAGCAGACGTTGACCGTGACCGATG
CGCAGCCTGCGGGTAAAGCGAAGAAGAAACAAGATCAAGCAAAGCCCGATGACAAGATGCAATTGCCACAGGTGCTCGTC
GAAAGCCGCAATGTTATCCCGATCGGCGAGCAGCCGGATGCCGAAGGCATACACAATTATGTTGTGACGCGGACAACGAC
GGGCAGCAAGGCAAAGCTGCCGAACTCCTTCGTGCCGCAGACGGTCGCAACGGTGTCGCGTAAGCTGATGGATGATCAGG
CGGTGCGTACCATCAACGAGGCTTTGACCAATGTCGCCGGCGTCAATAATGCTACACCGGGCTATTTTCCGCTCGACCAA
TATTACGTTGCCACCATTCGCGGCTTTCCAAACAGCATGGTCCTGCGCGATGGACTGTGGGATCCTGCACCTTTCGGCAA
TCAGGCGGTGGTAAGCGTTGATCGGGTGGAGGTTTTGAAAGGTCCTTCCGCCTTGATGTATGGCGCTTTTATCGGCGGTA
TCGGCGGTGTCATCAATGTCATCAGCAAAAAGCCTTTGCCTTATTTTGCCGGTCAAATTGGCACCGAAATCGACAATTTC
GGCTCGCATGTCTTGAAAGGCGACGTCTCGACACCTTTGACGGCCGACGGCAATTGGTTGGCGCGCACCAGCTTCCTTAT
TGGCGGCTATGATGCGTTCTATCAGACGTCACAATATACCAAGGCCGCTGTCTCGGAAATCATTCAGGGGCGTCTCTCGG
CTCAGGACGCTATTACTGCTGGCTACGAATATCGCTGGCAAAGATCTAAACCCTATAGTGGCATTCCCTATCAAGCGGCG
ATGGGGAAAAGTCCCAATCAATATTTGAGTTCTCTTGGTTGGTTCGGCCGAGATCTGAACGTCAATGATCCAAGAGGCTT
TTGGACCTTTGTGAGTCAGAATGTCCGCTTCGCCTATGAACATGAATTCAATCAGGACTGGAGCTTCAAATCTTCGAGCC
AATATACAAAAACGGCGCGCGATCAGACAGCTATCACTGCCACTGCTGGCTTCAGCCCAGTGGGTTCGCCATTATACACA
CAGAATTTTCAGCAGATCAAAATGGGGCCTGTCTACTCTATAGATACGGATCAGACATTGACCGGTCATTTTGATACGCT
CGGCATCAAGCACGATCTCGTCGCTGGAGCACGGTTCGCCGATTCTTGGTACAAAATGGATATGCGACGTCCGACACCAA
ATCCATTCGGGACGGGGGCAAATGCGATTACATTCACCAATCCCTATGATCCCAATTGGGGCGTGCCCTTCGGCAATCTA
CAGCAATATATGTATGGCTTTTCGGCGCAATCACAGTTCAATGAATATATCAATGATATCATTTCATTTACTGACCGCTT
GCGGTTGTCGACGGGGTTGAACTATGTGCAATATAATTCCTATAGCCGATCGGGCATGAATCCGAATCCAGCCATGCAAG
GGAGTACGCTCTATCACAAGAATGGCATCGGCTGGCGTGTTGGCTTGATGTACGATATTCTTCCGGAACTGACTGGTTAT
GCATCCTATGCGACAACCTTCCAACCGCAACCGTCGAATGTGACGACAGACGGCCATATTCAGAATTTCGATCCACTTTA
TGGCGATCAAAAGGAAGTCGGTCTGAAATATAATGTCACCGATTTCGCGACTGCTGGCGTTGCTCTTTATGACATTATTC
TATCGAATGTGACGGCAGCCGATCCCGACCCCCTCAATGCGCAAAATGGCTACAAGGTTCAGACTGGCAAGCAACGTAGT
ACCGGCGGTGAAGTCGAGACGACTCTGCATCCCCTGCCGGGTTGGGATATGCTCGCTTCCTATTCGCATATCAATGCACG
GATCGTGCAGGATGGCACCTATCAAATTGGTTCGCCGGTTCCCAATGTGCCCAAGGATTATTTCCGTTTTTGGACCACTT
ATGAGTTTCAGGATGGACCGGCCCAGGGCTTTACCATCGGCGGTGGCCTGACGACATCGGCCGGCCGGACCACCAATCTC
ATTAGCCAGGCGAGTCCCAATCTCGTCGCTTATCTCGGTGGCTACACGACCTTTGACCTCATGGCCGCCTATCGTTTTGG
CCCGGCGAAAGTCAGCGTCAATATCAAGAATCTGTTCAACACACGCTATTGGGCAGGCACCGCGAGCAGCTATAATTATC
TTTATCCTGGTCAGCCGCTGACCGTGATCGCTAGGCTCTCTGTGGATTTCTGA

Upstream 100 bases:

>100_bases
TAAAGCTATATCGTTATAGATATTGCTTGTTCGATCGGACGTCCGTCACTTCGGGAATCTTCCGCGCGATCGCGCAAGCT
TTTGCGGGGAGTTTGGTCTC

Downstream 100 bases:

>100_bases
CACATGCTTTTGTTCATGCGCCTATGCCTCGTCTTTTGTCTTGGGACATTGATTTCGTCTCTTTCCCCTCTGGATCAGGC
GCAAGCGCGTGAGATCACGG

Product: TonB-dependent siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MNRKSVVNARSSLRTLLPDAQSVSFLLSASILALTCEMTWAQEMTQQTLTVTDAQPAGKAKKKQDQAKPDDKMQLPQVLV
ESRNVIPIGEQPDAEGIHNYVVTRTTTGSKAKLPNSFVPQTVATVSRKLMDDQAVRTINEALTNVAGVNNATPGYFPLDQ
YYVATIRGFPNSMVLRDGLWDPAPFGNQAVVSVDRVEVLKGPSALMYGAFIGGIGGVINVISKKPLPYFAGQIGTEIDNF
GSHVLKGDVSTPLTADGNWLARTSFLIGGYDAFYQTSQYTKAAVSEIIQGRLSAQDAITAGYEYRWQRSKPYSGIPYQAA
MGKSPNQYLSSLGWFGRDLNVNDPRGFWTFVSQNVRFAYEHEFNQDWSFKSSSQYTKTARDQTAITATAGFSPVGSPLYT
QNFQQIKMGPVYSIDTDQTLTGHFDTLGIKHDLVAGARFADSWYKMDMRRPTPNPFGTGANAITFTNPYDPNWGVPFGNL
QQYMYGFSAQSQFNEYINDIISFTDRLRLSTGLNYVQYNSYSRSGMNPNPAMQGSTLYHKNGIGWRVGLMYDILPELTGY
ASYATTFQPQPSNVTTDGHIQNFDPLYGDQKEVGLKYNVTDFATAGVALYDIILSNVTAADPDPLNAQNGYKVQTGKQRS
TGGEVETTLHPLPGWDMLASYSHINARIVQDGTYQIGSPVPNVPKDYFRFWTTYEFQDGPAQGFTIGGGLTTSAGRTTNL
ISQASPNLVAYLGGYTTFDLMAAYRFGPAKVSVNIKNLFNTRYWAGTASSYNYLYPGQPLTVIARLSVDF

Sequences:

>Translated_790_residues
MNRKSVVNARSSLRTLLPDAQSVSFLLSASILALTCEMTWAQEMTQQTLTVTDAQPAGKAKKKQDQAKPDDKMQLPQVLV
ESRNVIPIGEQPDAEGIHNYVVTRTTTGSKAKLPNSFVPQTVATVSRKLMDDQAVRTINEALTNVAGVNNATPGYFPLDQ
YYVATIRGFPNSMVLRDGLWDPAPFGNQAVVSVDRVEVLKGPSALMYGAFIGGIGGVINVISKKPLPYFAGQIGTEIDNF
GSHVLKGDVSTPLTADGNWLARTSFLIGGYDAFYQTSQYTKAAVSEIIQGRLSAQDAITAGYEYRWQRSKPYSGIPYQAA
MGKSPNQYLSSLGWFGRDLNVNDPRGFWTFVSQNVRFAYEHEFNQDWSFKSSSQYTKTARDQTAITATAGFSPVGSPLYT
QNFQQIKMGPVYSIDTDQTLTGHFDTLGIKHDLVAGARFADSWYKMDMRRPTPNPFGTGANAITFTNPYDPNWGVPFGNL
QQYMYGFSAQSQFNEYINDIISFTDRLRLSTGLNYVQYNSYSRSGMNPNPAMQGSTLYHKNGIGWRVGLMYDILPELTGY
ASYATTFQPQPSNVTTDGHIQNFDPLYGDQKEVGLKYNVTDFATAGVALYDIILSNVTAADPDPLNAQNGYKVQTGKQRS
TGGEVETTLHPLPGWDMLASYSHINARIVQDGTYQIGSPVPNVPKDYFRFWTTYEFQDGPAQGFTIGGGLTTSAGRTTNL
ISQASPNLVAYLGGYTTFDLMAAYRFGPAKVSVNIKNLFNTRYWAGTASSYNYLYPGQPLTVIARLSVDF
>Mature_790_residues
MNRKSVVNARSSLRTLLPDAQSVSFLLSASILALTCEMTWAQEMTQQTLTVTDAQPAGKAKKKQDQAKPDDKMQLPQVLV
ESRNVIPIGEQPDAEGIHNYVVTRTTTGSKAKLPNSFVPQTVATVSRKLMDDQAVRTINEALTNVAGVNNATPGYFPLDQ
YYVATIRGFPNSMVLRDGLWDPAPFGNQAVVSVDRVEVLKGPSALMYGAFIGGIGGVINVISKKPLPYFAGQIGTEIDNF
GSHVLKGDVSTPLTADGNWLARTSFLIGGYDAFYQTSQYTKAAVSEIIQGRLSAQDAITAGYEYRWQRSKPYSGIPYQAA
MGKSPNQYLSSLGWFGRDLNVNDPRGFWTFVSQNVRFAYEHEFNQDWSFKSSSQYTKTARDQTAITATAGFSPVGSPLYT
QNFQQIKMGPVYSIDTDQTLTGHFDTLGIKHDLVAGARFADSWYKMDMRRPTPNPFGTGANAITFTNPYDPNWGVPFGNL
QQYMYGFSAQSQFNEYINDIISFTDRLRLSTGLNYVQYNSYSRSGMNPNPAMQGSTLYHKNGIGWRVGLMYDILPELTGY
ASYATTFQPQPSNVTTDGHIQNFDPLYGDQKEVGLKYNVTDFATAGVALYDIILSNVTAADPDPLNAQNGYKVQTGKQRS
TGGEVETTLHPLPGWDMLASYSHINARIVQDGTYQIGSPVPNVPKDYFRFWTTYEFQDGPAQGFTIGGGLTTSAGRTTNL
ISQASPNLVAYLGGYTTFDLMAAYRFGPAKVSVNIKNLFNTRYWAGTASSYNYLYPGQPLTVIARLSVDF

Specific function: Specific receptor for the siderophore ferric pseudobactin 358 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1786344, Length=829, Percent_Identity=24.1254523522316, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI1787344, Length=736, Percent_Identity=23.9130434782609, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1787024, Length=751, Percent_Identity=23.3022636484687, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR011662
- InterPro:   IPR000531
- InterPro:   IPR010916
- InterPro:   IPR010917
- InterPro:   IPR010105 [H]

Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 87018; Mature: 87018

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKSVVNARSSLRTLLPDAQSVSFLLSASILALTCEMTWAQEMTQQTLTVTDAQPAGKA
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHEEEEECCCCCCCC
KKKQDQAKPDDKMQLPQVLVESRNVIPIGEQPDAEGIHNYVVTRTTTGSKAKLPNSFVPQ
HHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHH
TVATVSRKLMDDQAVRTINEALTNVAGVNNATPGYFPLDQYYVATIRGFPNSMVLRDGLW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEEECCCCCEEEECCCC
DPAPFGNQAVVSVDRVEVLKGPSALMYGAFIGGIGGVINVISKKPLPYFAGQIGTEIDNF
CCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHH
GSHVLKGDVSTPLTADGNWLARTSFLIGGYDAFYQTSQYTKAAVSEIIQGRLSAQDAITA
CCCEEECCCCCCEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
GYEYRWQRSKPYSGIPYQAAMGKSPNQYLSSLGWFGRDLNVNDPRGFWTFVSQNVRFAYE
CCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
HEFNQDWSFKSSSQYTKTARDQTAITATAGFSPVGSPLYTQNFQQIKMGPVYSIDTDQTL
ECCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCHHHCCCHHEECCCEEECCCCCCC
TGHFDTLGIKHDLVAGARFADSWYKMDMRRPTPNPFGTGANAITFTNPYDPNWGVPFGNL
CCCCHHCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHH
QQYMYGFSAQSQFNEYINDIISFTDRLRLSTGLNYVQYNSYSRSGMNPNPAMQGSTLYHK
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEC
NGIGWRVGLMYDILPELTGYASYATTFQPQPSNVTTDGHIQNFDPLYGDQKEVGLKYNVT
CCCCEEEHHHHHHHHHHHCCHHHCEECCCCCCCCCCCCCCCCCCCCCCCCHHCCEEECCH
DFATAGVALYDIILSNVTAADPDPLNAQNGYKVQTGKQRSTGGEVETTLHPLPGWDMLAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCHHHHHH
YSHINARIVQDGTYQIGSPVPNVPKDYFRFWTTYEFQDGPAQGFTIGGGLTTSAGRTTNL
HCCCEEEEEECCCEECCCCCCCCCHHHHHHEEEEEECCCCCCCEEECCCCCCCCCCHHHH
ISQASPNLVAYLGGYTTFDLMAAYRFGPAKVSVNIKNLFNTRYWAGTASSYNYLYPGQPL
HHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEHHHHHCCCEEECCCCCCCEECCCCCE
TVIARLSVDF
EEEEEEECCC
>Mature Secondary Structure
MNRKSVVNARSSLRTLLPDAQSVSFLLSASILALTCEMTWAQEMTQQTLTVTDAQPAGKA
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECHHHHHHHHHHEEEEECCCCCCCC
KKKQDQAKPDDKMQLPQVLVESRNVIPIGEQPDAEGIHNYVVTRTTTGSKAKLPNSFVPQ
HHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHH
TVATVSRKLMDDQAVRTINEALTNVAGVNNATPGYFPLDQYYVATIRGFPNSMVLRDGLW
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEEECCCCCEEEECCCC
DPAPFGNQAVVSVDRVEVLKGPSALMYGAFIGGIGGVINVISKKPLPYFAGQIGTEIDNF
CCCCCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHH
GSHVLKGDVSTPLTADGNWLARTSFLIGGYDAFYQTSQYTKAAVSEIIQGRLSAQDAITA
CCCEEECCCCCCEECCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
GYEYRWQRSKPYSGIPYQAAMGKSPNQYLSSLGWFGRDLNVNDPRGFWTFVSQNVRFAYE
CCEEEEECCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEE
HEFNQDWSFKSSSQYTKTARDQTAITATAGFSPVGSPLYTQNFQQIKMGPVYSIDTDQTL
ECCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCCHHHCCCHHEECCCEEECCCCCCC
TGHFDTLGIKHDLVAGARFADSWYKMDMRRPTPNPFGTGANAITFTNPYDPNWGVPFGNL
CCCCHHCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHH
QQYMYGFSAQSQFNEYINDIISFTDRLRLSTGLNYVQYNSYSRSGMNPNPAMQGSTLYHK
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEEEC
NGIGWRVGLMYDILPELTGYASYATTFQPQPSNVTTDGHIQNFDPLYGDQKEVGLKYNVT
CCCCEEEHHHHHHHHHHHCCHHHCEECCCCCCCCCCCCCCCCCCCCCCCCHHCCEEECCH
DFATAGVALYDIILSNVTAADPDPLNAQNGYKVQTGKQRSTGGEVETTLHPLPGWDMLAS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCHHHHHH
YSHINARIVQDGTYQIGSPVPNVPKDYFRFWTTYEFQDGPAQGFTIGGGLTTSAGRTTNL
HCCCEEEEEECCCEECCCCCCCCCHHHHHHEEEEEECCCCCCCEEECCCCCCCCCCHHHH
ISQASPNLVAYLGGYTTFDLMAAYRFGPAKVSVNIKNLFNTRYWAGTASSYNYLYPGQPL
HHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEHHHHHCCCEEECCCCCCCEECCCCCE
TVIARLSVDF
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1646376 [H]