Definition Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome.
Accession NC_010581
Length 4,170,153

Click here to switch to the map view.

The map label for this gene is yejA [C]

Identifier: 182679157

GI number: 182679157

Start: 2508662

End: 2510482

Strand: Direct

Name: yejA [C]

Synonym: Bind_2194

Alternate gene names: 182679157

Gene position: 2508662-2510482 (Clockwise)

Preceding gene: 182679155

Following gene: 182679158

Centisome position: 60.16

GC content: 58.65

Gene sequence:

>1821_bases
ATGCCTTGCTCCTGTTTCAAACCTGTTTTCCTCCTCCTCTTGCTTTGGCAGACATCCTTTGGATTCGCATCGCTTGGAAG
GGCCGCAGAAGCCGCGCATGCGATCGCCATGCATGGCGAGCCGGCTCTCTCAGCGGATTTTCCCCATTTTCCCTACGCCA
ATCCCAATGCATCGCAGGGCGGCACTCTGCGTCTTGGTTTTCAAGGGACATTCGACAGTCTCAATCCATTCAATCTCAAA
GCCGGTTCGACCGCCCAAGGTCTCAACGGCAATATTTTCGAACCCCTCATGACGCGCTCGCTCGACGAGCCTTTCACGCT
CTACGGATTGATCGCCGAGTCGATCGAGACCGATGACTCACGCGAGTTCGTCATTTTTCATCTCAACCCCAAGGCGCATT
TTTCCGACGGCACACCCATCACGGCAGACGATGTCCTCTTCAGTTTCAACCTGTTGAAAACCCATGGGCGGCCACAGCAT
CGCGTCTCCTATGGCATGGTGAAATCAGCCACTGCTCCCGATCCCCTGACTGTCCGCTATGATCTCAATTCCGGGCAAGA
CCGGGAAATGCCCCTGATGCTCGCCTTGATGCCCGTTCTGCCCAAACATCTCGTCAATCCAGCGACCTTCGATGAAGCGA
CGCTCAATCCGCCGACCGGATCGGGCCCCTATATCCTCACGGAAGTCAAACCGGGCGAGCGTCTCATCCTGCATCGAGAT
CCCCATTATTGGGCGGCCGATCTGTCGACACGGCGCGGCCTGTTCAATTTCGAGACGATCACCATTGACTATTTTCGCGA
CGCCAACAGCCTGTTCGAAGCTTTCCGGGCGGGCCTCATCGATTTCCGCGAGGAGACCAGCCCCGCACGCTGGATGAAGG
CTTATGATTTTCCAGCTCTCACCGAGGGCCGGATCTTCAAGGAAGCTTTGCCCATCGGCGGCCCCAAGGGCATGGAGGGA
TTCGTCTTCAATCTGCGGCGCCCCCTCTTCACGGATATCAAGGTTCGCGAGGCGCTCGCCTCCCTCTTCGATTTCGAATG
GATCAACACCAATCTTTATGGTGGCCTGTACCGCCGCACACAGAGTTTCTTCGACGAATCGGAATTAGCCTCCACCGGCC
GCCCGGCGAGCGAGGCCGAACGGCGCCTGCTCGCGCCGTTTCCCGGCGCGGTGCGTGAGGATATTTTGGAAGGGCGCTGG
CATCCACCGCAGACCGACGGCTCAGGGCAGGATCGCACCCAACCTCGCCATGCTCTCGGGCTCCTGCACGAGGCAGGTTA
TGATTTGAAGGACGGCCTCCTCTCCAAGGAGGGTAAGCCGCTCTCCTTCGAGATCATGGTCACGGATCGTAATCGAGAGA
GGCTGGCGCTTGATTATGCCCGTTCGCTGACCCGGATCGGCGTCGATGCCCATGTCCGCCTGGTCGATGAAGTTCAGTAT
CAGCGGCGGCGCCAAAAATTCGATTTCGACATGATGATCGGCAGTTGGATAGCCTCCGCCTCGCCCGGCAATGAGCAGCG
GTCACGCTGGGGCTCGAAAAGCGCCGATCAGGAAGCCTCGTTCAATCTTGCCGGTGTCAAATCACCCGCCGTGGATGCGA
TGATCAATCATCTCCTCGCCGCACGAACGCATGACGATTTCGTCACAGCCGTACGGGCCTATGATCGTGTTCTGCTTTCA
GGCTTTTACGTCGTGCCGCTGTTTCATTCGCCGACACAATGGATCGCCGGAACGACACGGCTCGGCCGGCCCGATGTCCT
GCCCCGCTATGGCGCGCCGAGCGGCAGCGCGACCTTGGAAACCTGGTGGATGCGGCCGTAA

Upstream 100 bases:

>100_bases
ATTATCTCCTCTTTTCTGGCTTAGTGCCCAATGCTTAATCTTTATCTTTCCTTTGTCTCCTTATCTTCGTCCCACATCCC
CCGCTGCGCCGGTTTCCTCG

Downstream 100 bases:

>100_bases
AACGGAACGTGCCCGGACGCTTGCGACCAGAAACGCTCTTGGCCTGGTTCCTGCCTCTTCGCTCGAATGCCAAGCCATCG
TATAATCAAGCCGTTCCGCT

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 605

Protein sequence:

>606_residues
MPCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQGGTLRLGFQGTFDSLNPFNLK
AGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDSREFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQH
RVSYGMVKSATAPDPLTVRYDLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD
PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPALTEGRIFKEALPIGGPKGMEG
FVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRTQSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRW
HPPQTDGSGQDRTQPRHALGLLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY
QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLAARTHDDFVTAVRAYDRVLLS
GFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLETWWMRP

Sequences:

>Translated_606_residues
MPCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQGGTLRLGFQGTFDSLNPFNLK
AGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDSREFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQH
RVSYGMVKSATAPDPLTVRYDLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD
PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPALTEGRIFKEALPIGGPKGMEG
FVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRTQSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRW
HPPQTDGSGQDRTQPRHALGLLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY
QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLAARTHDDFVTAVRAYDRVLLS
GFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLETWWMRP
>Mature_605_residues
PCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQGGTLRLGFQGTFDSLNPFNLKA
GSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDSREFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQHR
VSYGMVKSATAPDPLTVRYDLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRDP
HYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPALTEGRIFKEALPIGGPKGMEGF
VFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRTQSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRWH
PPQTDGSGQDRTQPRHALGLLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQYQ
RRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLAARTHDDFVTAVRAYDRVLLSG
FYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLETWWMRP

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=599, Percent_Identity=35.2253756260434, Blast_Score=353, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 67822; Mature: 67690

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQG
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC
GTLRLGFQGTFDSLNPFNLKAGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDS
CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC
REFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQHRVSYGMVKSATAPDPLTVRY
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEE
DLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD
ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECC
PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPAL
CCCEECCCHHCCCCEEEEEEEEEEHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
TEGRIFKEALPIGGPKGMEGFVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRT
CCCCHHHHHCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH
QSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRWHPPQTDGSGQDRTQPRHALG
HHHHCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
LLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY
HHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLA
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH
ARTHDDFVTAVRAYDRVLLSGFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLE
HCCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
TWWMRP
EEECCC
>Mature Secondary Structure 
PCSCFKPVFLLLLLWQTSFGFASLGRAAEAAHAIAMHGEPALSADFPHFPYANPNASQG
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCC
GTLRLGFQGTFDSLNPFNLKAGSTAQGLNGNIFEPLMTRSLDEPFTLYGLIAESIETDDS
CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC
REFVIFHLNPKAHFSDGTPITADDVLFSFNLLKTHGRPQHRVSYGMVKSATAPDPLTVRY
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEEE
DLNSGQDREMPLMLALMPVLPKHLVNPATFDEATLNPPTGSGPYILTEVKPGERLILHRD
ECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECC
PHYWAADLSTRRGLFNFETITIDYFRDANSLFEAFRAGLIDFREETSPARWMKAYDFPAL
CCCEECCCHHCCCCEEEEEEEEEEHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
TEGRIFKEALPIGGPKGMEGFVFNLRRPLFTDIKVREALASLFDFEWINTNLYGGLYRRT
CCCCHHHHHCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHH
QSFFDESELASTGRPASEAERRLLAPFPGAVREDILEGRWHPPQTDGSGQDRTQPRHALG
HHHHCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
LLHEAGYDLKDGLLSKEGKPLSFEIMVTDRNRERLALDYARSLTRIGVDAHVRLVDEVQY
HHHHCCCCHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
QRRRQKFDFDMMIGSWIASASPGNEQRSRWGSKSADQEASFNLAGVKSPAVDAMINHLLA
HHHHHCCCHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH
ARTHDDFVTAVRAYDRVLLSGFYVVPLFHSPTQWIAGTTRLGRPDVLPRYGAPSGSATLE
HCCCHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
TWWMRP
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA