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The map label for this gene is exbD [H]

Identifier: 182679108

GI number: 182679108

Start: 2448343

End: 2448846

Strand: Reverse

Name: exbD [H]

Synonym: Bind_2145

Alternate gene names: 182679108

Gene position: 2448846-2448343 (Counterclockwise)

Preceding gene: 182679109

Following gene: 182679107

Centisome position: 58.72

GC content: 55.75

Gene sequence:

>504_bases
ATGGCTTTTTCATCCTCTCGCGGGAGTGGGGGCGGCTATCAGCCGCTCGCTGACATTAATGTGACTCCTCTCGTTGATGT
CATGCTGGTGCTGCTCATCGTCTTCATGATTACGGCTCCCATGCTGGCGACGGGCGTCAAGGTCAATCTGCCGCAAGCCA
AGGCAGCGCAGCCCTTGAATCCAAAGGAACCGGTGGTCGTCATCGTGACGAAGGAGGGGAAGCTCAACCTTAACGCCGAC
GAGATCGTTTCGGAACAATTGGTAGCGGCCATACAAGCAAAAATCGAAGGCGATATGAATCATGTCATTCATGTGCGTGG
TGACAAGGATGCCTCTTATGGCGATGTCATCGCAATCATGGATCTGCTGGCGAGCAATGGCATGACCCATATTGCCTTAT
TGTCTGATCCGCATGCCAAGGCCGATGCGGCGAAAGCTGCGAAACTTCAGGCGCCGCCGGCTTCTGCTCCGAACACGGCT
CCAGCGACGGGAGGGCAGCCATGA

Upstream 100 bases:

>100_bases
CCATGCTGGCGGGGCTCGGCCAGACGCTCAGCCATCTTGTCGAGGAACGGGCTGTCATGCTCATCAGCCGCTCATCGCAA
AAATCGAAGGAGGTCGCATA

Downstream 100 bases:

>100_bases
CGGCGGTCACCGCGGAGGATTTTATATCGTCCTCGCCACAGGAGGAGATTCCTCCGGTCAAGCCGGTTTGGTTGAGGCCG
GCAGCGATTACCTTTGCGGT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MAFSSSRGSGGGYQPLADINVTPLVDVMLVLLIVFMITAPMLATGVKVNLPQAKAAQPLNPKEPVVVIVTKEGKLNLNAD
EIVSEQLVAAIQAKIEGDMNHVIHVRGDKDASYGDVIAIMDLLASNGMTHIALLSDPHAKADAAKAAKLQAPPASAPNTA
PATGGQP

Sequences:

>Translated_167_residues
MAFSSSRGSGGGYQPLADINVTPLVDVMLVLLIVFMITAPMLATGVKVNLPQAKAAQPLNPKEPVVVIVTKEGKLNLNAD
EIVSEQLVAAIQAKIEGDMNHVIHVRGDKDASYGDVIAIMDLLASNGMTHIALLSDPHAKADAAKAAKLQAPPASAPNTA
PATGGQP
>Mature_166_residues
AFSSSRGSGGGYQPLADINVTPLVDVMLVLLIVFMITAPMLATGVKVNLPQAKAAQPLNPKEPVVVIVTKEGKLNLNADE
IVSEQLVAAIQAKIEGDMNHVIHVRGDKDASYGDVIAIMDLLASNGMTHIALLSDPHAKADAAKAAKLQAPPASAPNTAP
ATGGQP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=126, Percent_Identity=38.0952380952381, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 17234; Mature: 17103

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFSSSRGSGGGYQPLADINVTPLVDVMLVLLIVFMITAPMLATGVKVNLPQAKAAQPLN
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
PKEPVVVIVTKEGKLNLNADEIVSEQLVAAIQAKIEGDMNHVIHVRGDKDASYGDVIAIM
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
DLLASNGMTHIALLSDPHAKADAAKAAKLQAPPASAPNTAPATGGQP
HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFSSSRGSGGGYQPLADINVTPLVDVMLVLLIVFMITAPMLATGVKVNLPQAKAAQPLN
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCC
PKEPVVVIVTKEGKLNLNADEIVSEQLVAAIQAKIEGDMNHVIHVRGDKDASYGDVIAIM
CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
DLLASNGMTHIALLSDPHAKADAAKAAKLQAPPASAPNTAPATGGQP
HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]