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The map label for this gene is ytbD [H]

Identifier: 182679082

GI number: 182679082

Start: 2419073

End: 2420296

Strand: Direct

Name: ytbD [H]

Synonym: Bind_2119

Alternate gene names: 182679082

Gene position: 2419073-2420296 (Clockwise)

Preceding gene: 182679079

Following gene: 182679083

Centisome position: 58.01

GC content: 62.58

Gene sequence:

>1224_bases
ATGTCTCTCGCCGCTTCCGGACAAGCATCCCCATTTTCCGAAACCACCGTCCGCTGGACCGAATTCGCTTTGGCTGTTGG
CGGTTTCGGCATCGGCACGGGTGAATTCGCGATCATGGGCCTGTTGCCGAATGTCGCCGAAGATTATGCAGTTTCGGTCC
CCGAGGCCGGTCATGTCATCAGCTCTTATGCGCTTGGCGTCGTGGTCGGCGCGCCGATCATCACGGTGATTGCCGCGCGC
CTGTCACGGCGTGTCTTGTTGCTCTTTTTGATGGGCCTGTTCGCGCTGGGCAATCTTGCAAGCGCGCTGGCTCCGAGTTT
CGGCACTCTGCTCGCCTTGCGTTTCTTCAGCGGCCTGCCGCATGGGGCCTATTTCGGCGTCGCCTCGCTCGTCGCGGCCA
TGATGGCCGGCCCCGATAAACGAGCCCGCGCGGTCGGCCGGGTCATGCTTGGCCTCACCATCGCGACCCTGTTCGGAACG
CCGCTCGCCACCTGGTTCGGCCAGAGCGTCGGCTGGCGCGCGGCCTTTGTGACGGTCGGACTGATCGGCGCGCTTACGGT
CGCCTTGATCTATCGATTTGTCCCGGCCGACCAACCCGATAAAGAGGCAAGCCCCTTGCGCGAACTCGGCGCCTTGCGCA
ATCGCGAGGTCTGGCTGACGCTCGGCGTCGGCGCGATCGGCTTTGGCGGCATGTTCACCGTCTTCAGCTATATCGCGCCC
ATTTTGATCAACGTCACCGGCATGCCCGCGGCCATCATTCCCTTCGTGCTCTGCGTCTTCGGCATCGGCATGATTCTCGG
CAATATTATCGGCTCGCGGCTTTCGGATTGGGCGCTTCTGCCGACGATTGGCGGTCTATTGATCTGGAACGCATTTGTTT
TGATGCTTTTCACTTTTACCGCGCCTTATCCTTTCGCCGCCCTTCTCAGCGTTCTCTTCGTCGGCACCAATTTCGCGCTC
GTTCCGGCATTGCAAACCCGCTTGATGGATGTGGCGGCCGAGGCGCAGACCCTGGCCGCCGCCCTCAACCATTCCGCCTT
CAATATCGCCAATGCTTTGGGCGCCTGGCTCGGCGGCCTCGCCATTGCGGCAGGGTTGGGCTGGACATCAACCGGCTGGG
TCGGCGCGCTCCTGGCCCTGGGTGGGCTTGCCGTTTTCGGTCTCTCCCTCTGGCTCGGCCGGTCCGATTCCGAGCCCTTG
GAGCCATTGGCGCGGGAAGCTTGA

Upstream 100 bases:

>100_bases
ATCGGCAAAGCCTACGCCTGACTCAGGCGATCCCCCGCGACAGGCGAGACCAAAAGCTGGACGCATCGCCGAGCGCTCCT
TGCATTGGACTGATTTTCCT

Downstream 100 bases:

>100_bases
TCGATTACATCGCGGTAGACATGGAGAACATCATGCGCGTGCTTATGCGGCAGAGTGCTTTTGCGCTTATCCTTTCGGGC
CTTGCCACGCCTGGCGCCCT

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSLAASGQASPFSETTVRWTEFALAVGGFGIGTGEFAIMGLLPNVAEDYAVSVPEAGHVISSYALGVVVGAPIITVIAAR
LSRRVLLLFLMGLFALGNLASALAPSFGTLLALRFFSGLPHGAYFGVASLVAAMMAGPDKRARAVGRVMLGLTIATLFGT
PLATWFGQSVGWRAAFVTVGLIGALTVALIYRFVPADQPDKEASPLRELGALRNREVWLTLGVGAIGFGGMFTVFSYIAP
ILINVTGMPAAIIPFVLCVFGIGMILGNIIGSRLSDWALLPTIGGLLIWNAFVLMLFTFTAPYPFAALLSVLFVGTNFAL
VPALQTRLMDVAAEAQTLAAALNHSAFNIANALGAWLGGLAIAAGLGWTSTGWVGALLALGGLAVFGLSLWLGRSDSEPL
EPLAREA

Sequences:

>Translated_407_residues
MSLAASGQASPFSETTVRWTEFALAVGGFGIGTGEFAIMGLLPNVAEDYAVSVPEAGHVISSYALGVVVGAPIITVIAAR
LSRRVLLLFLMGLFALGNLASALAPSFGTLLALRFFSGLPHGAYFGVASLVAAMMAGPDKRARAVGRVMLGLTIATLFGT
PLATWFGQSVGWRAAFVTVGLIGALTVALIYRFVPADQPDKEASPLRELGALRNREVWLTLGVGAIGFGGMFTVFSYIAP
ILINVTGMPAAIIPFVLCVFGIGMILGNIIGSRLSDWALLPTIGGLLIWNAFVLMLFTFTAPYPFAALLSVLFVGTNFAL
VPALQTRLMDVAAEAQTLAAALNHSAFNIANALGAWLGGLAIAAGLGWTSTGWVGALLALGGLAVFGLSLWLGRSDSEPL
EPLAREA
>Mature_406_residues
SLAASGQASPFSETTVRWTEFALAVGGFGIGTGEFAIMGLLPNVAEDYAVSVPEAGHVISSYALGVVVGAPIITVIAARL
SRRVLLLFLMGLFALGNLASALAPSFGTLLALRFFSGLPHGAYFGVASLVAAMMAGPDKRARAVGRVMLGLTIATLFGTP
LATWFGQSVGWRAAFVTVGLIGALTVALIYRFVPADQPDKEASPLRELGALRNREVWLTLGVGAIGFGGMFTVFSYIAPI
LINVTGMPAAIIPFVLCVFGIGMILGNIIGSRLSDWALLPTIGGLLIWNAFVLMLFTFTAPYPFAALLSVLFVGTNFALV
PALQTRLMDVAAEAQTLAAALNHSAFNIANALGAWLGGLAIAAGLGWTSTGWVGALLALGGLAVFGLSLWLGRSDSEPLE
PLAREA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=365, Percent_Identity=39.4520547945205, Blast_Score=235, Evalue=5e-63,
Organism=Escherichia coli, GI1786595, Length=387, Percent_Identity=34.625322997416, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1787808, Length=228, Percent_Identity=28.5087719298246, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693198, Length=342, Percent_Identity=25.4385964912281, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42273; Mature: 42142

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS00027 HOMEOBOX_1 ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAASGQASPFSETTVRWTEFALAVGGFGIGTGEFAIMGLLPNVAEDYAVSVPEAGHVI
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHEECCCCCHHHH
SSYALGVVVGAPIITVIAARLSRRVLLLFLMGLFALGNLASALAPSFGTLLALRFFSGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
HGAYFGVASLVAAMMAGPDKRARAVGRVMLGLTIATLFGTPLATWFGQSVGWRAAFVTVG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH
LIGALTVALIYRFVPADQPDKEASPLRELGALRNREVWLTLGVGAIGFGGMFTVFSYIAP
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
ILINVTGMPAAIIPFVLCVFGIGMILGNIIGSRLSDWALLPTIGGLLIWNAFVLMLFTFT
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
APYPFAALLSVLFVGTNFALVPALQTRLMDVAAEAQTLAAALNHSAFNIANALGAWLGGL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAAGLGWTSTGWVGALLALGGLAVFGLSLWLGRSDSEPLEPLAREA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC
>Mature Secondary Structure 
SLAASGQASPFSETTVRWTEFALAVGGFGIGTGEFAIMGLLPNVAEDYAVSVPEAGHVI
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHEECCCCCHHHH
SSYALGVVVGAPIITVIAARLSRRVLLLFLMGLFALGNLASALAPSFGTLLALRFFSGLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
HGAYFGVASLVAAMMAGPDKRARAVGRVMLGLTIATLFGTPLATWFGQSVGWRAAFVTVG
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH
LIGALTVALIYRFVPADQPDKEASPLRELGALRNREVWLTLGVGAIGFGGMFTVFSYIAP
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
ILINVTGMPAAIIPFVLCVFGIGMILGNIIGSRLSDWALLPTIGGLLIWNAFVLMLFTFT
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
APYPFAALLSVLFVGTNFALVPALQTRLMDVAAEAQTLAAALNHSAFNIANALGAWLGGL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIAAGLGWTSTGWVGALLALGGLAVFGLSLWLGRSDSEPLEPLAREA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]