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The map label for this gene is yjcR [C]

Identifier: 182679075

GI number: 182679075

Start: 2412333

End: 2413451

Strand: Reverse

Name: yjcR [C]

Synonym: Bind_2112

Alternate gene names: 182679075

Gene position: 2413451-2412333 (Counterclockwise)

Preceding gene: 182679076

Following gene: 182679074

Centisome position: 57.87

GC content: 59.61

Gene sequence:

>1119_bases
ATGAAGCCGTTCTCCTTTTCCGTCACCAGACATGGCATTCCCCTGTTTGCGATCGTGATGATAGGCTTTGCCGGCTGGAC
GATTGCTTCGACAATGCGCCCGCGATCGGTGACCTCGCCGCCGATCGCCGCGCCGACGCAACCCTATGAGAAAAATGTCT
CGGGCACCGGTATTGTCGAACCTGCAAGTGAGGTCATGGCGCTCGCCATCGAACGCGGCGGTGTCGTGACCAGCGTTGAT
GTTGTGGCGGGTGATCACGTCCGGTTCGGACAAAAACTCTTTTCGATCGATGCACGCAATTATCAGGCGGCCGTTGATCA
GAATGAGGCAGCGGTTTTAGCCGCAGAGGCCGCGATCGGGTCCATCGATCAGAACATTCTTCTCCAGCGCGACGCGATCA
ATCAGGCTCGAGCGAATCTCAATGTGACGGAAGCGGAGCGGACCCGTGCGTCTCTGGATCGATCGCGCTATGCCGCGCTC
GTGCGTAATGATTGGACGCCGCGCCAGCGCTATGAGCTCGCCACCGCTGATGCTGACAAAGCGGATGCGAATGTCATCGC
CGCGAAAGCGGCGCTCGCCAGCGCTGAGCAGCAGATCGAGGTTCTGTCGGCCCAGCGTCGCGAGGCTGAGGCGAGACTGG
CCCAAACCAAGGCTTTGCTCGAGGGGGCAAGGGCTGACCTCGATAAGACCGTGGTCAAAGCGCCGGTTGAAGGTGTGATC
CTCAAGGTCAATGTCAGGCTTGGTGAATATGCCTTGGCGGGCGTGCTGAATAATCCGCTCATGACAATGGGGACTGTCGA
TCCGCTGCATGTTCGAGTGGATATCGACGAAGCTGACGCCTGGCGCGTGCGGTCAGACAGCCCCGCAACGGCCCGTATGC
GCGGCAATCCCAGCATTGCGGTGCCGCTCTCTTTCGTTCGTTTCGAACCCTATGTGCTGCCGAAACGCTCCCTCTCCGGC
GATACATCCGAGCGGGTGGATACGCGGGTTCTCCAGGGGATCTACGCCTTTGCACCACAAGATTTCCCGGCCTTTACGGG
GCAGCAGGTCGATGTGTTCATCGAGGCTCCAAAGCGGGACGGGGATGCGCAAAGGCTCGCCACATACAGGAATGATTGA

Upstream 100 bases:

>100_bases
CGCATTTTCCCTTTCGCCGATCATATCGCCACAATGGAAGACGGCCGCATACGTTCTGTCCGGTCCGCTCCGTTCGGCCA
GCTTTCGGAGGTCGCTTGAC

Downstream 100 bases:

>100_bases
TTTTGCTGATTGCGCATTATTATTCACTATGATTTAATAAAAGAAGCTCGATCGCGCTTCAGCTCAATTCCTCTTTTAAA
GAGGTCAATACCAAGCTGCC

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: Secretion Protein HlyD; Efflux Transporter RND Family MFP Subunit; ABC-Type Export System Membrane Fusion Protein; Export System Membrane Fusion Protein; Membrane-Fusion Protein; Multidrug Resistance Homolog Transmembrane Protein; Multidrug Resistance Protein A; Secretion Protein; Multidrug Resistance Efflux Pump

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MKPFSFSVTRHGIPLFAIVMIGFAGWTIASTMRPRSVTSPPIAAPTQPYEKNVSGTGIVEPASEVMALAIERGGVVTSVD
VVAGDHVRFGQKLFSIDARNYQAAVDQNEAAVLAAEAAIGSIDQNILLQRDAINQARANLNVTEAERTRASLDRSRYAAL
VRNDWTPRQRYELATADADKADANVIAAKAALASAEQQIEVLSAQRREAEARLAQTKALLEGARADLDKTVVKAPVEGVI
LKVNVRLGEYALAGVLNNPLMTMGTVDPLHVRVDIDEADAWRVRSDSPATARMRGNPSIAVPLSFVRFEPYVLPKRSLSG
DTSERVDTRVLQGIYAFAPQDFPAFTGQQVDVFIEAPKRDGDAQRLATYRND

Sequences:

>Translated_372_residues
MKPFSFSVTRHGIPLFAIVMIGFAGWTIASTMRPRSVTSPPIAAPTQPYEKNVSGTGIVEPASEVMALAIERGGVVTSVD
VVAGDHVRFGQKLFSIDARNYQAAVDQNEAAVLAAEAAIGSIDQNILLQRDAINQARANLNVTEAERTRASLDRSRYAAL
VRNDWTPRQRYELATADADKADANVIAAKAALASAEQQIEVLSAQRREAEARLAQTKALLEGARADLDKTVVKAPVEGVI
LKVNVRLGEYALAGVLNNPLMTMGTVDPLHVRVDIDEADAWRVRSDSPATARMRGNPSIAVPLSFVRFEPYVLPKRSLSG
DTSERVDTRVLQGIYAFAPQDFPAFTGQQVDVFIEAPKRDGDAQRLATYRND
>Mature_372_residues
MKPFSFSVTRHGIPLFAIVMIGFAGWTIASTMRPRSVTSPPIAAPTQPYEKNVSGTGIVEPASEVMALAIERGGVVTSVD
VVAGDHVRFGQKLFSIDARNYQAAVDQNEAAVLAAEAAIGSIDQNILLQRDAINQARANLNVTEAERTRASLDRSRYAAL
VRNDWTPRQRYELATADADKADANVIAAKAALASAEQQIEVLSAQRREAEARLAQTKALLEGARADLDKTVVKAPVEGVI
LKVNVRLGEYALAGVLNNPLMTMGTVDPLHVRVDIDEADAWRVRSDSPATARMRGNPSIAVPLSFVRFEPYVLPKRSLSG
DTSERVDTRVLQGIYAFAPQDFPAFTGQQVDVFIEAPKRDGDAQRLATYRND

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Inner Membrane-Bound [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790519, Length=238, Percent_Identity=28.1512605042017, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40381; Mature: 40381

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPFSFSVTRHGIPLFAIVMIGFAGWTIASTMRPRSVTSPPIAAPTQPYEKNVSGTGIVE
CCCCCCCHHHCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
PASEVMALAIERGGVVTSVDVVAGDHVRFGQKLFSIDARNYQAAVDQNEAAVLAAEAAIG
CHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHEEECCCCEEECCCCCCCEEEEEHHHHC
SIDQNILLQRDAINQARANLNVTEAERTRASLDRSRYAALVRNDWTPRQRYELATADADK
CCCHHHEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCC
ADANVIAAKAALASAEQQIEVLSAQRREAEARLAQTKALLEGARADLDKTVVKAPVEGVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEE
LKVNVRLGEYALAGVLNNPLMTMGTVDPLHVRVDIDEADAWRVRSDSPATARMRGNPSIA
EEEEEEECCCHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEECCCCCEEEECCCCCEE
VPLSFVRFEPYVLPKRSLSGDTSERVDTRVLQGIYAFAPQDFPAFTGQQVDVFIEAPKRD
EEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
GDAQRLATYRND
CCHHHHHHCCCC
>Mature Secondary Structure
MKPFSFSVTRHGIPLFAIVMIGFAGWTIASTMRPRSVTSPPIAAPTQPYEKNVSGTGIVE
CCCCCCCHHHCCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCC
PASEVMALAIERGGVVTSVDVVAGDHVRFGQKLFSIDARNYQAAVDQNEAAVLAAEAAIG
CHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHEEECCCCEEECCCCCCCEEEEEHHHHC
SIDQNILLQRDAINQARANLNVTEAERTRASLDRSRYAALVRNDWTPRQRYELATADADK
CCCHHHEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEECCCCCC
ADANVIAAKAALASAEQQIEVLSAQRREAEARLAQTKALLEGARADLDKTVVKAPVEGVI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEE
LKVNVRLGEYALAGVLNNPLMTMGTVDPLHVRVDIDEADAWRVRSDSPATARMRGNPSIA
EEEEEEECCCHHHHHHCCCEEEECCCCEEEEEEEECCCCCEEEECCCCCEEEECCCCCEE
VPLSFVRFEPYVLPKRSLSGDTSERVDTRVLQGIYAFAPQDFPAFTGQQVDVFIEAPKRD
EEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCC
GDAQRLATYRND
CCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA