Click here to switch to the map view.

The map label for this gene is soxC [H]

Identifier: 182679019

GI number: 182679019

Start: 2346915

End: 2348162

Strand: Reverse

Name: soxC [H]

Synonym: Bind_2054

Alternate gene names: 182679019

Gene position: 2348162-2346915 (Counterclockwise)

Preceding gene: 182679022

Following gene: 182679018

Centisome position: 56.31

GC content: 58.89

Gene sequence:

>1248_bases
ATGACGATTCGATCAGCTGGGCCTGAAACAGTGCAGGACGCCTTTCCGGCACGGGCCAAGATTCCTGAGCCGGCTCATAT
CCTGCGTGATGATGCGGAAGCTATTGCCATCGCCCATGCCCTGGCTGAGGATTTCGCCAAGGGAGCGGCGGAGCGCGATC
GCGAGCGGCGTCTGCCTTTCGCCGAGCTCGATCGATTCTCGCAAAGTGGTCTGTGGGGCATGACTGTGCCGCGTGCCTAT
GGCGGGGCGGCGGTCTCTTATGTCACCGTCGCCAAGGTGTTTGCCATACTGGCCGCCGCCGATGCCTCAATCGCGCAGAT
CGCGCAAAATCATGTCAGCCTGGTCGATATTTTGCGCTTCGATCCGGTCGAAGCCCGTAAGAGTCGTTACTATCAGGCAG
CGCTCGAGGGTGTGCGCTTTGGCAATGCTCTTTCGGAAAAGAGCGGCAAAACGATTTTTGATATGAAGACGCGCCTGATC
AGGAAGGGCGATCGCTTCATCGTCACGGGCCAGAAATTCTACTGCACCGGTGCCCTTTTCGCGCATATCGTCCCGGTCCT
TGCCATTGATGAGGCTGGCAAAGGCCATATGGTCATGGTGCCGCGCGATGCGCCGGGCCTCAGTGTGATTGATGATTGGA
ACGGCGTGGGCCAACGCACGACCGCCAGCGGCACGGTCATTTTGGCGGATGTCGACGTGACAGAGAGCCAGATCGTGCCA
TCCCATCTCGCATTCGATCAGGTATCGGTACATGGAGCGGTGGCGCAAATCATTCAGGCCGCTATTGATGCCGGGATCGC
TCGGCGCGCCTTCGAGGAAACAGTGACTTTCGTGCGGCAATCCGCAAGGCCCTGGGTCGATAGCGGGCAGGATCGCGCCA
GCGATGATGTCTATTCCATTCAGGCGATCGCCGATCTCCAGATCCGTCTGCATGCGGCGGAGGCCGTGTTGGAGCGCGGT
GGCGAGGTGATCGATGCCGGTCTGCTCGAGGAGACGGCGGAAACGGTCGCGGAAGCCTCGATCGCCATCGCCGAGGCCAA
GGTGCTGACCACTGAAATCTCGCTTCTGGCCGGCGAGAAACTTTTCGAACTTGGTGGCAGCCGTTCGGTTCTCTCCACAT
ACAATTTCGATCGCCTGTGGCGTGATGCGCGTACGCATACATTACATGATCCGGTGCGGTGGAAATTCCATGCTATCGGC
AATTACTATCTCAACGGCATCAAGCCGCCACGCCATTCATGGTTGTAA

Upstream 100 bases:

>100_bases
CCGCGGCAGAAACGACCGGAGCTGATCCATTCTTTGATCAGCGCGGCCGGGCTTCGGCTTTGCTGGCGTCTGGATTGCCA
ATTGTTGAAAGCAGGTGAGA

Downstream 100 bases:

>100_bases
TGTCCTCATGATTGTTCAATCTCGTGAAGGATATCCGGCGAAAGGAATTCATGCATGAATGCGCCGCAGAAAATCCAAGC
TTTGTCTGTGACACCCCCTA

Product: acyl-CoA dehydrogenase type 2

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MTIRSAGPETVQDAFPARAKIPEPAHILRDDAEAIAIAHALAEDFAKGAAERDRERRLPFAELDRFSQSGLWGMTVPRAY
GGAAVSYVTVAKVFAILAAADASIAQIAQNHVSLVDILRFDPVEARKSRYYQAALEGVRFGNALSEKSGKTIFDMKTRLI
RKGDRFIVTGQKFYCTGALFAHIVPVLAIDEAGKGHMVMVPRDAPGLSVIDDWNGVGQRTTASGTVILADVDVTESQIVP
SHLAFDQVSVHGAVAQIIQAAIDAGIARRAFEETVTFVRQSARPWVDSGQDRASDDVYSIQAIADLQIRLHAAEAVLERG
GEVIDAGLLEETAETVAEASIAIAEAKVLTTEISLLAGEKLFELGGSRSVLSTYNFDRLWRDARTHTLHDPVRWKFHAIG
NYYLNGIKPPRHSWL

Sequences:

>Translated_415_residues
MTIRSAGPETVQDAFPARAKIPEPAHILRDDAEAIAIAHALAEDFAKGAAERDRERRLPFAELDRFSQSGLWGMTVPRAY
GGAAVSYVTVAKVFAILAAADASIAQIAQNHVSLVDILRFDPVEARKSRYYQAALEGVRFGNALSEKSGKTIFDMKTRLI
RKGDRFIVTGQKFYCTGALFAHIVPVLAIDEAGKGHMVMVPRDAPGLSVIDDWNGVGQRTTASGTVILADVDVTESQIVP
SHLAFDQVSVHGAVAQIIQAAIDAGIARRAFEETVTFVRQSARPWVDSGQDRASDDVYSIQAIADLQIRLHAAEAVLERG
GEVIDAGLLEETAETVAEASIAIAEAKVLTTEISLLAGEKLFELGGSRSVLSTYNFDRLWRDARTHTLHDPVRWKFHAIG
NYYLNGIKPPRHSWL
>Mature_414_residues
TIRSAGPETVQDAFPARAKIPEPAHILRDDAEAIAIAHALAEDFAKGAAERDRERRLPFAELDRFSQSGLWGMTVPRAYG
GAAVSYVTVAKVFAILAAADASIAQIAQNHVSLVDILRFDPVEARKSRYYQAALEGVRFGNALSEKSGKTIFDMKTRLIR
KGDRFIVTGQKFYCTGALFAHIVPVLAIDEAGKGHMVMVPRDAPGLSVIDDWNGVGQRTTASGTVILADVDVTESQIVPS
HLAFDQVSVHGAVAQIIQAAIDAGIARRAFEETVTFVRQSARPWVDSGQDRASDDVYSIQAIADLQIRLHAAEAVLERGG
EVIDAGLLEETAETVAEASIAIAEAKVLTTEISLLAGEKLFELGGSRSVLSTYNFDRLWRDARTHTLHDPVRWKFHAIGN
YYLNGIKPPRHSWL

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4501859, Length=357, Percent_Identity=24.9299719887955, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538396, Length=342, Percent_Identity=23.6842105263158, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17508101, Length=330, Percent_Identity=24.5454545454545, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17506239, Length=269, Percent_Identity=24.907063197026, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 45209; Mature: 45078

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRSAGPETVQDAFPARAKIPEPAHILRDDAEAIAIAHALAEDFAKGAAERDRERRLPF
CCCCCCCCHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AELDRFSQSGLWGMTVPRAYGGAAVSYVTVAKVFAILAAADASIAQIAQNHVSLVDILRF
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
DPVEARKSRYYQAALEGVRFGNALSEKSGKTIFDMKTRLIRKGDRFIVTGQKFYCTGALF
CCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCEEEEECCEEEEHHHHH
AHIVPVLAIDEAGKGHMVMVPRDAPGLSVIDDWNGVGQRTTASGTVILADVDVTESQIVP
HHHHHHHEECCCCCCCEEEEECCCCCCEEEECCCCCCCCEECCCEEEEEECCCCHHHCCC
SHLAFDQVSVHGAVAQIIQAAIDAGIARRAFEETVTFVRQSARPWVDSGQDRASDDVYSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
QAIADLQIRLHAAEAVLERGGEVIDAGLLEETAETVAEASIAIAEAKVLTTEISLLAGEK
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFELGGSRSVLSTYNFDRLWRDARTHTLHDPVRWKFHAIGNYYLNGIKPPRHSWL
HHHCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TIRSAGPETVQDAFPARAKIPEPAHILRDDAEAIAIAHALAEDFAKGAAERDRERRLPF
CCCCCCCHHHHHCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AELDRFSQSGLWGMTVPRAYGGAAVSYVTVAKVFAILAAADASIAQIAQNHVSLVDILRF
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
DPVEARKSRYYQAALEGVRFGNALSEKSGKTIFDMKTRLIRKGDRFIVTGQKFYCTGALF
CCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHCCCEEEEECCEEEEHHHHH
AHIVPVLAIDEAGKGHMVMVPRDAPGLSVIDDWNGVGQRTTASGTVILADVDVTESQIVP
HHHHHHHEECCCCCCCEEEEECCCCCCEEEECCCCCCCCEECCCEEEEEECCCCHHHCCC
SHLAFDQVSVHGAVAQIIQAAIDAGIARRAFEETVTFVRQSARPWVDSGQDRASDDVYSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE
QAIADLQIRLHAAEAVLERGGEVIDAGLLEETAETVAEASIAIAEAKVLTTEISLLAGEK
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFELGGSRSVLSTYNFDRLWRDARTHTLHDPVRWKFHAIGNYYLNGIKPPRHSWL
HHHCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]