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The map label for this gene is soxC [H]

Identifier: 182679018

GI number: 182679018

Start: 2345649

End: 2346860

Strand: Reverse

Name: soxC [H]

Synonym: Bind_2053

Alternate gene names: 182679018

Gene position: 2346860-2345649 (Counterclockwise)

Preceding gene: 182679019

Following gene: 182679017

Centisome position: 56.28

GC content: 58.09

Gene sequence:

>1212_bases
ATGAATGCGCCGCAGAAAATCCAAGCTTTGTCTGTGACACCCCCTAGAGTGTCCAGCGACGCGCAGGCAGTTGCTGCTGC
CGCGAATCTTGCCGAAATCTTCAATCAGGCCGCCGTCGAGCGCGATCGCAATCGCCGTTTGCCTTATCCCGAGATCGAGC
AATTCTCGCAAACGGGCCTTGGTGGCATGACTGTTCCCAAGGACTATGGTGGCGCCGATGTCTCGGCGCTGACGGTTGCG
GAAGTGACGGCGATCCTGGCCTCCGCCGATGGGAGCCTTGGGCAGATTCCGCAAAATCATTTTTATCTCGTGGAGGCGGT
TCGGCTCAACGGGACGGATGCGCAGCGGCGCTTCTATTTCGAACGTGCTCTTTTGGGGGATCGTTTCGCCAATGCTTTGG
CGGAAGCGGGTGGAAAATATGCCACCGACCAGACGACGACTGTTCTGCCCGATGGTGATGATTATGTCTTGAATGGCAGG
AAGTTCTATTGTTCTGGATCGCTGTTTGGTCATTGGATCGTCGCGGCGGCGCAGAATGATCAAAACAAGCGTGTTCTTGT
TTTCGTACCCAGGGATACACAGGGCCTGACCGTGATCGACGATTGGTCGGGCATGGGCCAGCGCACCACCGGCAGCGGCA
CGGTGATTTTCGACAATGTCCGCGTCTCCGCTTTCGCCATAATCCCGCATTATCTGGCCTTCGAGCAGCCGACGCAGATG
GGCGCCTTCGCGCAGATCATTCATGCCGCGATCGATCTTGGTATTGCGCGCGGCGCCTTTGCGGCGACGGTCGATTTCGT
ACGGACCAAGGCACGGCCCTGGGTCGATAGCGGCCAGGAGCACGCCTACGAAGATCCTTATACGATTGCCGCCATCGGCG
ATTTGCGTGTTCGTATCGCTGCGGCGGAAGCCTTGGTGCGTCGCGCCGGGAAAATCATTGACAAGGCTCGGGTTGAGCCG
GAAACCTATTCCGAACCCGCTTCGATCGCTGTGGCGGAAGCCCGTGTTGCCACCAATGATGTCTCGCTCCTCGTGACCAG
TAAATTGTTCGAGCTCGGCGGTTCGCGCAGCGCTTTGGCCTCCCTCGATCTTGATCGCTATTGGCGCGACGCCCGCACGC
ATACATTGCACGATCCGGTGCGCTGGAAATATTTCTCTCTTGGCAATTATTGGCTGAATGGGGTCAAGCCCCCGCGCCGT
GGCAATTTCTGA

Upstream 100 bases:

>100_bases
TTACTATCTCAACGGCATCAAGCCGCCACGCCATTCATGGTTGTAATGTCCTCATGATTGTTCAATCTCGTGAAGGATAT
CCGGCGAAAGGAATTCATGC

Downstream 100 bases:

>100_bases
GGGAGGCTGGAATGAGCAAGGAAATCCGCCTCAACGCTTTTTCGATGAATTGCGTGGTGCACCAATCGCCCGGTCTCTGG
CGTCATCCGCGTGATCGTTC

Product: acyl-CoA dehydrogenase type 2

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNAPQKIQALSVTPPRVSSDAQAVAAAANLAEIFNQAAVERDRNRRLPYPEIEQFSQTGLGGMTVPKDYGGADVSALTVA
EVTAILASADGSLGQIPQNHFYLVEAVRLNGTDAQRRFYFERALLGDRFANALAEAGGKYATDQTTTVLPDGDDYVLNGR
KFYCSGSLFGHWIVAAAQNDQNKRVLVFVPRDTQGLTVIDDWSGMGQRTTGSGTVIFDNVRVSAFAIIPHYLAFEQPTQM
GAFAQIIHAAIDLGIARGAFAATVDFVRTKARPWVDSGQEHAYEDPYTIAAIGDLRVRIAAAEALVRRAGKIIDKARVEP
ETYSEPASIAVAEARVATNDVSLLVTSKLFELGGSRSALASLDLDRYWRDARTHTLHDPVRWKYFSLGNYWLNGVKPPRR
GNF

Sequences:

>Translated_403_residues
MNAPQKIQALSVTPPRVSSDAQAVAAAANLAEIFNQAAVERDRNRRLPYPEIEQFSQTGLGGMTVPKDYGGADVSALTVA
EVTAILASADGSLGQIPQNHFYLVEAVRLNGTDAQRRFYFERALLGDRFANALAEAGGKYATDQTTTVLPDGDDYVLNGR
KFYCSGSLFGHWIVAAAQNDQNKRVLVFVPRDTQGLTVIDDWSGMGQRTTGSGTVIFDNVRVSAFAIIPHYLAFEQPTQM
GAFAQIIHAAIDLGIARGAFAATVDFVRTKARPWVDSGQEHAYEDPYTIAAIGDLRVRIAAAEALVRRAGKIIDKARVEP
ETYSEPASIAVAEARVATNDVSLLVTSKLFELGGSRSALASLDLDRYWRDARTHTLHDPVRWKYFSLGNYWLNGVKPPRR
GNF
>Mature_403_residues
MNAPQKIQALSVTPPRVSSDAQAVAAAANLAEIFNQAAVERDRNRRLPYPEIEQFSQTGLGGMTVPKDYGGADVSALTVA
EVTAILASADGSLGQIPQNHFYLVEAVRLNGTDAQRRFYFERALLGDRFANALAEAGGKYATDQTTTVLPDGDDYVLNGR
KFYCSGSLFGHWIVAAAQNDQNKRVLVFVPRDTQGLTVIDDWSGMGQRTTGSGTVIFDNVRVSAFAIIPHYLAFEQPTQM
GAFAQIIHAAIDLGIARGAFAATVDFVRTKARPWVDSGQEHAYEDPYTIAAIGDLRVRIAAAEALVRRAGKIIDKARVEP
ETYSEPASIAVAEARVATNDVSLLVTSKLFELGGSRSALASLDLDRYWRDARTHTLHDPVRWKYFSLGNYWLNGVKPPRR
GNF

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4557233, Length=361, Percent_Identity=24.6537396121884, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI4501859, Length=349, Percent_Identity=24.3553008595989, Blast_Score=83, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17508101, Length=350, Percent_Identity=24.8571428571429, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI71990804, Length=288, Percent_Identity=27.0833333333333, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17506239, Length=383, Percent_Identity=24.2819843342037, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32563615, Length=219, Percent_Identity=28.310502283105, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17534899, Length=358, Percent_Identity=22.9050279329609, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI21356377, Length=358, Percent_Identity=24.0223463687151, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24646207, Length=349, Percent_Identity=24.0687679083095, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 43996; Mature: 43996

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPQKIQALSVTPPRVSSDAQAVAAAANLAEIFNQAAVERDRNRRLPYPEIEQFSQTGL
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
GGMTVPKDYGGADVSALTVAEVTAILASADGSLGQIPQNHFYLVEAVRLNGTDAQRRFYF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHH
ERALLGDRFANALAEAGGKYATDQTTTVLPDGDDYVLNGRKFYCSGSLFGHWIVAAAQND
HHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEECCEEEEEECCCCEEEEEEEECCC
QNKRVLVFVPRDTQGLTVIDDWSGMGQRTTGSGTVIFDNVRVSAFAIIPHYLAFEQPTQM
CCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHH
GAFAQIIHAAIDLGIARGAFAATVDFVRTKARPWVDSGQEHAYEDPYTIAAIGDLRVRIA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEHH
AAEALVRRAGKIIDKARVEPETYSEPASIAVAEARVATNDVSLLVTSKLFELGGSRSALA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHEEECCCHHHHHHHHHHHCCCCCHHHH
SLDLDRYWRDARTHTLHDPVRWKYFSLGNYWLNGVKPPRRGNF
HCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNAPQKIQALSVTPPRVSSDAQAVAAAANLAEIFNQAAVERDRNRRLPYPEIEQFSQTGL
CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
GGMTVPKDYGGADVSALTVAEVTAILASADGSLGQIPQNHFYLVEAVRLNGTDAQRRFYF
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHH
ERALLGDRFANALAEAGGKYATDQTTTVLPDGDDYVLNGRKFYCSGSLFGHWIVAAAQND
HHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEECCEEEEEECCCCEEEEEEEECCC
QNKRVLVFVPRDTQGLTVIDDWSGMGQRTTGSGTVIFDNVRVSAFAIIPHYLAFEQPTQM
CCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHH
GAFAQIIHAAIDLGIARGAFAATVDFVRTKARPWVDSGQEHAYEDPYTIAAIGDLRVRIA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCEEEEHH
AAEALVRRAGKIIDKARVEPETYSEPASIAVAEARVATNDVSLLVTSKLFELGGSRSALA
HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHEEECCCHHHHHHHHHHHCCCCCHHHH
SLDLDRYWRDARTHTLHDPVRWKYFSLGNYWLNGVKPPRRGNF
HCCHHHHHHHCCCCCCCCCCEEEEEEECHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]