| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is epsJ [H]
Identifier: 182679013
GI number: 182679013
Start: 2339212
End: 2340873
Strand: Reverse
Name: epsJ [H]
Synonym: Bind_2048
Alternate gene names: 182679013
Gene position: 2340873-2339212 (Counterclockwise)
Preceding gene: 182679014
Following gene: 182679009
Centisome position: 56.13
GC content: 44.83
Gene sequence:
>1662_bases GTGGCCATTTTAGAACATATTCCGGATTTGGAAAAATGTGTCGCCAAGATCGATGATCTCCTTCGGCCAGACGGCGTCGC CTATTTGCAGGGTTGTCCCTTATGGGCAGGATCTCATGGCCATCATGTATGGGTGCTGAAGGAAGAAGGAGATTATGATT CCGAGCTTACGCCTGAGATTGAAAATCGGACAAACGGACCCCTTTTCAGCTTTGTCGAAAAAGACAAAAATCCGATACCT CATTGGGCGCATCTTGTTTTGACGCCGGATAGTCTCACTGAATTTCTGACAAAAGAAAATGTATCGGAGTCTCATGCACG GAGAATTATCAATTTTGTCTATAATGTCGATGGGACGATGATCGGATGCTGCTCGAACTTCAAATCGGCCAGTGAAATCA TCAAGACATTTCAGACAAAATTTATCGTGGATGCAGAGCGTATTCCAAGTGCTCATCCCAATGAATATTTTACTGCCGCC AGAAAAAAATATTCGTATTGGGATTTGCAAACACATGGCCTGATGCTTTGGCTTAAGCCAAAATCATATATGCTGGAACG CGTCCGGGAACCTGATCCCAAAGTGTCTGTTATTGTGCCTTTCTACAAGGTTGAGGACTATCTGGGGGAGTGTATCGAAA GCATCATTCGCCAAGATTATAAAAACATCGAAATTATTTTGGTTGATGACGCTTCTCCCGATGGCTCCCGTGGGATTGCC CAACGTTTTGCGGCAAAGGATTCAAGGATCCGTGTTCTGACCCATGAGAAAAACGAAGGCCTCGGTCCGGCGAGAAATAC GGGGGTCCATCATGCGACAGGCTTTTATGTTTTTTTCCTGGATTCGGATGATCTTCTGCATTCCTCTCAAGCAATTGGTA AACTTGTCTCTGCAGCACAAAGCCATAGCAACTGCCCGGTCGTCGTTGGTGGATGCGTCCGGTTGATGGCCAATGGCAAG ATTCAGCCCGTCGATCATATTGATGATAGAGGCGGCTTAAATAAATCAGGCGGCGTGGTGCATGGCGTCGAAGCGTTTCT CGCAGGTGTGCGATTACCGAATGCCTATTATTTGCCACCAAGAGCCTGGGGAGCTCTGATCGAACGAACCTTTTATGAAA ACCTGATGCTAGACTTCCCATCTGGCGAACATGAAGATCTTGTTCATACACCTTTCCTTTATTTTCTCGCTGACAATGTT CTCTATGTAAAAGATATTGTCGTGACTTATCGATACCGTGACTGCAGTATTTCCAATGCGCGATGGACACCGGAAATGGT TCGGCGCTACGGAGATCTTTGGCGCAATTTTAAATCAATTGCTTTGCGTCGTGGGCTTGAAAATTATTTGGGAGATTGCG CATTCAAATTTATTTATCATTTGATTTGGAGAATGCGGAACAATTCGTTCGATGATGACTCCAGGACAGAGGTCCTTAAC TTAGTGGGAAATATGTTTCAGGATGTAGAGAATGTCACATACAAGCATGAGTTTTATCGCTCGATGAACTCTGTTCGTAA ATTCGTTGGTGGCACCTTTCGTCGGGATAAATATTATGAATGGTTGACCAAATCGTTGCCGGAGGACTTAGTTCTGGATT ATTATCGCAATCATAGTGTTTTAGGGCGTTTGTCGTTTGGTCAGTGGTTACGATGGTTTTGA
Upstream 100 bases:
>100_bases TTGTATTTCCGATGAGCCTCTGCCGAAAAACGTTGAGTTTTTTGCAGGGGATGTTGGGGACATCGGATTTGACAAAAAGT GTTTTGATATTGTCTACGGC
Downstream 100 bases:
>100_bases AAAGGCGGCGAATACGGTGTAGAGGATTGCTCCCTTTGATTGGCGAGGTGTCGCGATAATTCGATGCTTGCCGTTAACAC GGCCAGGCGTTGGTGAAATC
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 553; Mature: 552
Protein sequence:
>553_residues MAILEHIPDLEKCVAKIDDLLRPDGVAYLQGCPLWAGSHGHHVWVLKEEGDYDSELTPEIENRTNGPLFSFVEKDKNPIP HWAHLVLTPDSLTEFLTKENVSESHARRIINFVYNVDGTMIGCCSNFKSASEIIKTFQTKFIVDAERIPSAHPNEYFTAA RKKYSYWDLQTHGLMLWLKPKSYMLERVREPDPKVSVIVPFYKVEDYLGECIESIIRQDYKNIEIILVDDASPDGSRGIA QRFAAKDSRIRVLTHEKNEGLGPARNTGVHHATGFYVFFLDSDDLLHSSQAIGKLVSAAQSHSNCPVVVGGCVRLMANGK IQPVDHIDDRGGLNKSGGVVHGVEAFLAGVRLPNAYYLPPRAWGALIERTFYENLMLDFPSGEHEDLVHTPFLYFLADNV LYVKDIVVTYRYRDCSISNARWTPEMVRRYGDLWRNFKSIALRRGLENYLGDCAFKFIYHLIWRMRNNSFDDDSRTEVLN LVGNMFQDVENVTYKHEFYRSMNSVRKFVGGTFRRDKYYEWLTKSLPEDLVLDYYRNHSVLGRLSFGQWLRWF
Sequences:
>Translated_553_residues MAILEHIPDLEKCVAKIDDLLRPDGVAYLQGCPLWAGSHGHHVWVLKEEGDYDSELTPEIENRTNGPLFSFVEKDKNPIP HWAHLVLTPDSLTEFLTKENVSESHARRIINFVYNVDGTMIGCCSNFKSASEIIKTFQTKFIVDAERIPSAHPNEYFTAA RKKYSYWDLQTHGLMLWLKPKSYMLERVREPDPKVSVIVPFYKVEDYLGECIESIIRQDYKNIEIILVDDASPDGSRGIA QRFAAKDSRIRVLTHEKNEGLGPARNTGVHHATGFYVFFLDSDDLLHSSQAIGKLVSAAQSHSNCPVVVGGCVRLMANGK IQPVDHIDDRGGLNKSGGVVHGVEAFLAGVRLPNAYYLPPRAWGALIERTFYENLMLDFPSGEHEDLVHTPFLYFLADNV LYVKDIVVTYRYRDCSISNARWTPEMVRRYGDLWRNFKSIALRRGLENYLGDCAFKFIYHLIWRMRNNSFDDDSRTEVLN LVGNMFQDVENVTYKHEFYRSMNSVRKFVGGTFRRDKYYEWLTKSLPEDLVLDYYRNHSVLGRLSFGQWLRWF >Mature_552_residues AILEHIPDLEKCVAKIDDLLRPDGVAYLQGCPLWAGSHGHHVWVLKEEGDYDSELTPEIENRTNGPLFSFVEKDKNPIPH WAHLVLTPDSLTEFLTKENVSESHARRIINFVYNVDGTMIGCCSNFKSASEIIKTFQTKFIVDAERIPSAHPNEYFTAAR KKYSYWDLQTHGLMLWLKPKSYMLERVREPDPKVSVIVPFYKVEDYLGECIESIIRQDYKNIEIILVDDASPDGSRGIAQ RFAAKDSRIRVLTHEKNEGLGPARNTGVHHATGFYVFFLDSDDLLHSSQAIGKLVSAAQSHSNCPVVVGGCVRLMANGKI QPVDHIDDRGGLNKSGGVVHGVEAFLAGVRLPNAYYLPPRAWGALIERTFYENLMLDFPSGEHEDLVHTPFLYFLADNVL YVKDIVVTYRYRDCSISNARWTPEMVRRYGDLWRNFKSIALRRGLENYLGDCAFKFIYHLIWRMRNNSFDDDSRTEVLNL VGNMFQDVENVTYKHEFYRSMNSVRKFVGGTFRRDKYYEWLTKSLPEDLVLDYYRNHSVLGRLSFGQWLRWF
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles [H]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790044, Length=233, Percent_Identity=28.3261802575107, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1787259, Length=100, Percent_Identity=36, Blast_Score=71, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 63720; Mature: 63589
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAILEHIPDLEKCVAKIDDLLRPDGVAYLQGCPLWAGSHGHHVWVLKEEGDYDSELTPEI CCHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC ENRTNGPLFSFVEKDKNPIPHWAHLVLTPDSLTEFLTKENVSESHARRIINFVYNVDGTM CCCCCCCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCE IGCCSNFKSASEIIKTFQTKFIVDAERIPSAHPNEYFTAARKKYSYWDLQTHGLMLWLKP EEHHHCHHHHHHHHHHHHHHHEEEHHHCCCCCCCHHHHHHHHCCCEEEEEECCEEEEECC KSYMLERVREPDPKVSVIVPFYKVEDYLGECIESIIRQDYKNIEIILVDDASPDGSRGIA HHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH QRFAAKDSRIRVLTHEKNEGLGPARNTGVHHATGFYVFFLDSDDLLHSSQAIGKLVSAAQ HHHHCCCCCEEEEEECCCCCCCCCCCCCCCEECEEEEEEECCCHHHHHHHHHHHHHHHHH SHSNCPVVVGGCVRLMANGKIQPVDHIDDRGGLNKSGGVVHGVEAFLAGVRLPNAYYLPP CCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCC RAWGALIERTFYENLMLDFPSGEHEDLVHTPFLYFLADNVLYVKDIVVTYRYRDCSISNA HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCC RWTPEMVRRYGDLWRNFKSIALRRGLENYLGDCAFKFIYHLIWRMRNNSFDDDSRTEVLN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LVGNMFQDVENVTYKHEFYRSMNSVRKFVGGTFRRDKYYEWLTKSLPEDLVLDYYRNHSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCC LGRLSFGQWLRWF EEECCHHHHHHCC >Mature Secondary Structure AILEHIPDLEKCVAKIDDLLRPDGVAYLQGCPLWAGSHGHHVWVLKEEGDYDSELTPEI CHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCC ENRTNGPLFSFVEKDKNPIPHWAHLVLTPDSLTEFLTKENVSESHARRIINFVYNVDGTM CCCCCCCHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCE IGCCSNFKSASEIIKTFQTKFIVDAERIPSAHPNEYFTAARKKYSYWDLQTHGLMLWLKP EEHHHCHHHHHHHHHHHHHHHEEEHHHCCCCCCCHHHHHHHHCCCEEEEEECCEEEEECC KSYMLERVREPDPKVSVIVPFYKVEDYLGECIESIIRQDYKNIEIILVDDASPDGSRGIA HHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHH QRFAAKDSRIRVLTHEKNEGLGPARNTGVHHATGFYVFFLDSDDLLHSSQAIGKLVSAAQ HHHHCCCCCEEEEEECCCCCCCCCCCCCCCEECEEEEEEECCCHHHHHHHHHHHHHHHHH SHSNCPVVVGGCVRLMANGKIQPVDHIDDRGGLNKSGGVVHGVEAFLAGVRLPNAYYLPP CCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCC RAWGALIERTFYENLMLDFPSGEHEDLVHTPFLYFLADNVLYVKDIVVTYRYRDCSISNA HHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCC RWTPEMVRRYGDLWRNFKSIALRRGLENYLGDCAFKFIYHLIWRMRNNSFDDDSRTEVLN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH LVGNMFQDVENVTYKHEFYRSMNSVRKFVGGTFRRDKYYEWLTKSLPEDLVLDYYRNHSV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCC LGRLSFGQWLRWF EEECCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]