Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 182679007

GI number: 182679007

Start: 2333671

End: 2334978

Strand: Direct

Name: rarA [H]

Synonym: Bind_2042

Alternate gene names: 182679007

Gene position: 2333671-2334978 (Clockwise)

Preceding gene: 182679006

Following gene: 182679008

Centisome position: 55.96

GC content: 59.4

Gene sequence:

>1308_bases
ATGAGCGATCTTTTCAGTGCCGCCGGTCTTGAAAAGGATGTGCCGGGTCCGCTCGCCGATCGGCTACGTCCGCGCCGGCT
CGACGAAGTGGCGGGCCAGGAGCATTTGCTCGGTCCCGAAGGCGCCCTGACGCGACTTGTCGCGGCTGGCAGCCTCGGCA
GCCTGATCTTTTGGGGTCCACCCGGAACCGGCAAAACGACCGTCGCCCGCTTGCTCGCGAACGAGACGAAGCTCGCCTTC
GTGCAGATCTCGGCGATTTTTTCCGGCGTCGCCGAACTCAAGAAAGTGTTTGAGGAAGCAAGGGCGCGGCGACGACTCGG
CCAAGGCAGCCTGCTTTTCGTCGATGAGATCCATCGGTTCAATCGCGCGCAACAGGATAGTTTTTTGCCGGTCATGGAAG
ACGGCACGGTGACCTTGATCGGAGCCACGACGGAAAATCCCAGTTTCGAGCTCAATGCGGCGCTTCTTTCGCGCGCCCGT
GTTCTCGTCTTCCACGCACTCTCAGAAGAGGCGATCGAAAAGCTCCTGGCCCGCGCCGAAGCCATTGAAGGTCGCCCCCT
GCCCCTTGATGAAGAAGCGCGCATAACATTGAGACGCATGGCGGACGGCGATGGTCGTGCCGCCCTGACACTCGCGGAGG
AAGTGTGGCGCGCTGCGCGCGAGGGGGAGATCTTTTCCCCCGCAACCCTGGTTCAAGTCGCGCAACGGCGTGCGCCCATC
TACGATAAGGCGCAGGAAGGTCATTACAATCTGATCAGTGCCTTGCATAAAGCGGTGCGCGGCTCCGATCCCAATGCCGC
GCTTTACTATCTTGCCCGGATGTTCGAAGGCGGCGAGGATCGGCTGTTTATCGCCCGACGCGTCGTGCGCATGGCCGTGG
AAGATATCGGCCTTGCCGATCCGCAGGCCCTGCTCATCGCCAATGCCGCCAAAGACGCCTATGATTTTCTCGGTTCTCCA
GAAGGCGAACTGGCGATCGCCGAAGCCGTGGTCTATGTGGCGACCGCGCCGAAATCGAATGCCGTCTATCGCGCCTTCAA
ACAAGCGACAGCACTCGCCAAGGAACATGGTTCCTTGATGCCGCCCAAAATCATTCTCAACGCGCCGACGAAACTCATGA
AGAACGAAGGTTATGGTTCGGGATATCGCTATGATCACGACGAACCAGACGCTTTTTCAGGGCAGGATTATTGGCCGGAG
ATCTTGGGGCCACAAACGATCTATGAGCCGACATCGCGCGGTTTCGAGCGTGAGATTAACAAGCGTCTCGATTATTGGGC
AAGGCTTCGGAAAGAGCGTAACGGCTGA

Upstream 100 bases:

>100_bases
GGTCGGTCGTGGCCATGATATTTTGACGACGGTGCTCGGCGGCTGAAAGCTCGAAAGCGCCGGCGAATTCATTGCTGTTC
CATGAGGCGGATCGGCCGCG

Downstream 100 bases:

>100_bases
AGCTTTTGCGCTTTGACTGTTAAGCAAGACTCTGGAACCCTTTTCCACACTTTGTCCCTAAAGATCGCTCTCCCGGCATA
AGCGTCATACCAATGTTGAT

Product: ATPase central domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSDLFSAAGLEKDVPGPLADRLRPRRLDEVAGQEHLLGPEGALTRLVAAGSLGSLIFWGPPGTGKTTVARLLANETKLAF
VQISAIFSGVAELKKVFEEARARRRLGQGSLLFVDEIHRFNRAQQDSFLPVMEDGTVTLIGATTENPSFELNAALLSRAR
VLVFHALSEEAIEKLLARAEAIEGRPLPLDEEARITLRRMADGDGRAALTLAEEVWRAAREGEIFSPATLVQVAQRRAPI
YDKAQEGHYNLISALHKAVRGSDPNAALYYLARMFEGGEDRLFIARRVVRMAVEDIGLADPQALLIANAAKDAYDFLGSP
EGELAIAEAVVYVATAPKSNAVYRAFKQATALAKEHGSLMPPKIILNAPTKLMKNEGYGSGYRYDHDEPDAFSGQDYWPE
ILGPQTIYEPTSRGFEREINKRLDYWARLRKERNG

Sequences:

>Translated_435_residues
MSDLFSAAGLEKDVPGPLADRLRPRRLDEVAGQEHLLGPEGALTRLVAAGSLGSLIFWGPPGTGKTTVARLLANETKLAF
VQISAIFSGVAELKKVFEEARARRRLGQGSLLFVDEIHRFNRAQQDSFLPVMEDGTVTLIGATTENPSFELNAALLSRAR
VLVFHALSEEAIEKLLARAEAIEGRPLPLDEEARITLRRMADGDGRAALTLAEEVWRAAREGEIFSPATLVQVAQRRAPI
YDKAQEGHYNLISALHKAVRGSDPNAALYYLARMFEGGEDRLFIARRVVRMAVEDIGLADPQALLIANAAKDAYDFLGSP
EGELAIAEAVVYVATAPKSNAVYRAFKQATALAKEHGSLMPPKIILNAPTKLMKNEGYGSGYRYDHDEPDAFSGQDYWPE
ILGPQTIYEPTSRGFEREINKRLDYWARLRKERNG
>Mature_434_residues
SDLFSAAGLEKDVPGPLADRLRPRRLDEVAGQEHLLGPEGALTRLVAAGSLGSLIFWGPPGTGKTTVARLLANETKLAFV
QISAIFSGVAELKKVFEEARARRRLGQGSLLFVDEIHRFNRAQQDSFLPVMEDGTVTLIGATTENPSFELNAALLSRARV
LVFHALSEEAIEKLLARAEAIEGRPLPLDEEARITLRRMADGDGRAALTLAEEVWRAAREGEIFSPATLVQVAQRRAPIY
DKAQEGHYNLISALHKAVRGSDPNAALYYLARMFEGGEDRLFIARRVVRMAVEDIGLADPQALLIANAAKDAYDFLGSPE
GELAIAEAVVYVATAPKSNAVYRAFKQATALAKEHGSLMPPKIILNAPTKLMKNEGYGSGYRYDHDEPDAFSGQDYWPEI
LGPQTIYEPTSRGFEREINKRLDYWARLRKERNG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=432, Percent_Identity=43.5185185185185, Blast_Score=325, Evalue=4e-89,
Organism=Homo sapiens, GI18426904, Length=432, Percent_Identity=39.1203703703704, Blast_Score=270, Evalue=2e-72,
Organism=Escherichia coli, GI1787119, Length=421, Percent_Identity=47.7434679334917, Blast_Score=371, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6324111, Length=432, Percent_Identity=39.3518518518519, Blast_Score=296, Evalue=6e-81,
Organism=Saccharomyces cerevisiae, GI6324039, Length=207, Percent_Identity=28.9855072463768, Blast_Score=73, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 47895; Mature: 47764

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS00690 DEAH_ATP_HELICASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFSAAGLEKDVPGPLADRLRPRRLDEVAGQEHLLGPEGALTRLVAAGSLGSLIFWGP
CCCHHHHCCCCCCCCCCHHHHCCHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCCEEEECC
PGTGKTTVARLLANETKLAFVQISAIFSGVAELKKVFEEARARRRLGQGSLLFVDEIHRF
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
NRAQQDSFLPVMEDGTVTLIGATTENPSFELNAALLSRARVLVFHALSEEAIEKLLARAE
CCCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIEGRPLPLDEEARITLRRMADGDGRAALTLAEEVWRAAREGEIFSPATLVQVAQRRAPI
HCCCCCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
YDKAQEGHYNLISALHKAVRGSDPNAALYYLARMFEGGEDRLFIARRVVRMAVEDIGLAD
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PQALLIANAAKDAYDFLGSPEGELAIAEAVVYVATAPKSNAVYRAFKQATALAKEHGSLM
CCCEEEEHHHHHHHHHCCCCCCCEEHHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
PPKIILNAPTKLMKNEGYGSGYRYDHDEPDAFSGQDYWPEILGPQTIYEPTSRGFEREIN
CCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHH
KRLDYWARLRKERNG
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDLFSAAGLEKDVPGPLADRLRPRRLDEVAGQEHLLGPEGALTRLVAAGSLGSLIFWGP
CCHHHHCCCCCCCCCCHHHHCCHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCCEEEECC
PGTGKTTVARLLANETKLAFVQISAIFSGVAELKKVFEEARARRRLGQGSLLFVDEIHRF
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHH
NRAQQDSFLPVMEDGTVTLIGATTENPSFELNAALLSRARVLVFHALSEEAIEKLLARAE
CCCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIEGRPLPLDEEARITLRRMADGDGRAALTLAEEVWRAAREGEIFSPATLVQVAQRRAPI
HCCCCCCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
YDKAQEGHYNLISALHKAVRGSDPNAALYYLARMFEGGEDRLFIARRVVRMAVEDIGLAD
CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PQALLIANAAKDAYDFLGSPEGELAIAEAVVYVATAPKSNAVYRAFKQATALAKEHGSLM
CCCEEEEHHHHHHHHHCCCCCCCEEHHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC
PPKIILNAPTKLMKNEGYGSGYRYDHDEPDAFSGQDYWPEILGPQTIYEPTSRGFEREIN
CCEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHCCHHHHHHHHHH
KRLDYWARLRKERNG
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]