BacMap

Definition	Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome.
Accession	NC_010581
Length	4,170,153

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The map label for this gene is yusZ [H]

Identifier: 182678800

GI number: 182678800

Start: 2079759

End: 2080502

Strand: Direct

Name: yusZ [H]

Synonym: Bind_1830

Alternate gene names: 182678800

Gene position: 2079759-2080502 (Clockwise)

Preceding gene: 182678793

Following gene: 182678801

Centisome position: 49.87

GC content: 64.11

Gene sequence:

>744_bases
ATGAAAACCATCCTGATCACCGGATGCTCGTCCGGCTTCGGACTTGAAATCGCCAAATACTTTCTTGAGCGCGACTGGAA
GGTCGTCGCCACGATGCGCACGCCACGCGAGGATATACTGCCTCGTTCCGAGCATCTGCGCGTGCTCACGCTCGACGTCA
CCGATCCGGAGAGCATCCGTCAAGCCGTCGAGGCTGCGGGGCCGATAGACGTTCTCGTCAACAACGCGGGCTTCGGCGCG
GCATCGCCCTTCGAGGTCATACCAATGGCGACAGTGCGCGAGCTCTTCGAGACCAATACCTTCGGCACGATGGCCGTGAC
GCAGGCGGTGCTGCCCCAGTTCAGGCAACGCAAGGCCGGCGTCGTCGTGAACGTCACGTCGAGCGTGACCTTGAAATCGA
TCCCTCTGCTCGCTTCGTACACGGCAAGCAAGGCGGCGGTGAATGCATTCACGGAGGTGCTCGCGCTGGAACTCGAGCAG
TTCGGCGTGCGTGCGCGCCTCGTGCTGCCAGGGCGTTCGCCCGAGACCCGTTTCGCCGATAACGGCCACTCCCGCATGCA
GGGCCTCGACCACGAGGCCTATGCCGACCTCGTGAAGAGCCTCTTCGCGAGCTTCGCCGAGCCGGGACCGATCACGCACG
CGCAGGATGTGGCCGAAGCGGTGTGGCGCGCAGTGAACGATCCATCGAGCCCCATGAGAATCCCCGCTGGCGCTGACGCC
GTGAGCTGGGCCGCGTCGAGCTGA

Upstream 100 bases:

>100_bases
TATCCGGACTCCTGCAAACGAATCTTGGACTTTTGATTATAGAAGGTCCGACTGCAACGATCTATCGTCTTGGTATGGCA
AACCACTTCCAAGAGACCCC

Downstream 100 bases:

>100_bases
ATCCGGAGCCGGCTGGCCGACATCTCGGCACCAACGAAAGGATGTGGGCGAAACCTGCCCAACCACGACGCCGCCGCTAA
AACAATTCTCTCGTACGGAG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MKTILITGCSSGFGLEIAKYFLERDWKVVATMRTPREDILPRSEHLRVLTLDVTDPESIRQAVEAAGPIDVLVNNAGFGA
ASPFEVIPMATVRELFETNTFGTMAVTQAVLPQFRQRKAGVVVNVTSSVTLKSIPLLASYTASKAAVNAFTEVLALELEQ
FGVRARLVLPGRSPETRFADNGHSRMQGLDHEAYADLVKSLFASFAEPGPITHAQDVAEAVWRAVNDPSSPMRIPAGADA
VSWAASS

Sequences:

>Translated_247_residues
MKTILITGCSSGFGLEIAKYFLERDWKVVATMRTPREDILPRSEHLRVLTLDVTDPESIRQAVEAAGPIDVLVNNAGFGA
ASPFEVIPMATVRELFETNTFGTMAVTQAVLPQFRQRKAGVVVNVTSSVTLKSIPLLASYTASKAAVNAFTEVLALELEQ
FGVRARLVLPGRSPETRFADNGHSRMQGLDHEAYADLVKSLFASFAEPGPITHAQDVAEAVWRAVNDPSSPMRIPAGADA
VSWAASS
>Mature_247_residues
MKTILITGCSSGFGLEIAKYFLERDWKVVATMRTPREDILPRSEHLRVLTLDVTDPESIRQAVEAAGPIDVLVNNAGFGA
ASPFEVIPMATVRELFETNTFGTMAVTQAVLPQFRQRKAGVVVNVTSSVTLKSIPLLASYTASKAAVNAFTEVLALELEQ
FGVRARLVLPGRSPETRFADNGHSRMQGLDHEAYADLVKSLFASFAEPGPITHAQDVAEAVWRAVNDPSSPMRIPAGADA
VSWAASS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=254, Percent_Identity=33.4645669291339, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI40548397, Length=189, Percent_Identity=34.9206349206349, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI214010158, Length=189, Percent_Identity=34.9206349206349, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI214010156, Length=189, Percent_Identity=34.9206349206349, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI22758144, Length=189, Percent_Identity=34.9206349206349, Blast_Score=90, Evalue=1e-18,
Organism=Homo sapiens, GI119392083, Length=223, Percent_Identity=31.8385650224215, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI223718074, Length=183, Percent_Identity=36.0655737704918, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI20149619, Length=184, Percent_Identity=32.0652173913043, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI4504503, Length=182, Percent_Identity=34.0659340659341, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI7706318, Length=185, Percent_Identity=33.5135135135135, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI22507405, Length=265, Percent_Identity=31.3207547169811, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI150247226, Length=181, Percent_Identity=34.8066298342541, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI44680136, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI44680133, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI17738292, Length=194, Percent_Identity=29.8969072164948, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI19743808, Length=182, Percent_Identity=34.6153846153846, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI50726952, Length=189, Percent_Identity=36.5079365079365, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI157739938, Length=189, Percent_Identity=26.4550264550265, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI7705925, Length=172, Percent_Identity=29.6511627906977, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI4503817, Length=197, Percent_Identity=25.3807106598985, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI10190704, Length=181, Percent_Identity=28.7292817679558, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI19923817, Length=182, Percent_Identity=29.1208791208791, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=185, Percent_Identity=34.0540540540541, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI87082100, Length=188, Percent_Identity=34.5744680851064, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787820, Length=232, Percent_Identity=30.6034482758621, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790717, Length=180, Percent_Identity=30, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787335, Length=178, Percent_Identity=30.3370786516854, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=179, Percent_Identity=27.3743016759777, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=176, Percent_Identity=26.7045454545455, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787905, Length=180, Percent_Identity=28.8888888888889, Blast_Score=64, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=263, Percent_Identity=27.7566539923954, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17532177, Length=205, Percent_Identity=28.2926829268293, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=29.1828793774319, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=29.6442687747036, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=175, Percent_Identity=33.1428571428571, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17557780, Length=204, Percent_Identity=28.4313725490196, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI72001658, Length=212, Percent_Identity=26.4150943396226, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=30.6532663316583, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=174, Percent_Identity=32.183908045977, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193210355, Length=182, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=187, Percent_Identity=27.807486631016, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=188, Percent_Identity=30.8510638297872, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=35.8974358974359, Blast_Score=88, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=173, Percent_Identity=29.4797687861272, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24651139, Length=191, Percent_Identity=32.4607329842932, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=31.4516129032258, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI23397609, Length=229, Percent_Identity=31.8777292576419, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24643142, Length=183, Percent_Identity=31.1475409836066, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24644339, Length=242, Percent_Identity=29.3388429752066, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21358495, Length=184, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007236, Length=246, Percent_Identity=27.2357723577236, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI116007238, Length=183, Percent_Identity=30.0546448087432, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=26.6331658291457, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19922066, Length=244, Percent_Identity=28.6885245901639, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24639444, Length=182, Percent_Identity=30.2197802197802, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644337, Length=156, Percent_Identity=35.2564102564103, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24584744, Length=178, Percent_Identity=25.8426966292135, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26656; Mature: 26656

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTILITGCSSGFGLEIAKYFLERDWKVVATMRTPREDILPRSEHLRVLTLDVTDPESIR
CCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCEEEEEEECCCHHHHH
QAVEAAGPIDVLVNNAGFGAASPFEVIPMATVRELFETNTFGTMAVTQAVLPQFRQRKAG
HHHHHCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
VVVNVTSSVTLKSIPLLASYTASKAAVNAFTEVLALELEQFGVRARLVLPGRSPETRFAD
EEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
NGHSRMQGLDHEAYADLVKSLFASFAEPGPITHAQDVAEAVWRAVNDPSSPMRIPAGADA
CCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCH
VSWAASS
HHCCCCC
>Mature Secondary Structure
MKTILITGCSSGFGLEIAKYFLERDWKVVATMRTPREDILPRSEHLRVLTLDVTDPESIR
CCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHCCCCCCEEEEEEECCCHHHHH
QAVEAAGPIDVLVNNAGFGAASPFEVIPMATVRELFETNTFGTMAVTQAVLPQFRQRKAG
HHHHHCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
VVVNVTSSVTLKSIPLLASYTASKAAVNAFTEVLALELEQFGVRARLVLPGRSPETRFAD
EEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
NGHSRMQGLDHEAYADLVKSLFASFAEPGPITHAQDVAEAVWRAVNDPSSPMRIPAGADA
CCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCCH
VSWAASS
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]