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The map label for this gene is cspA [H]

Identifier: 182678504

GI number: 182678504

Start: 1729777

End: 1730451

Strand: Reverse

Name: cspA [H]

Synonym: Bind_1528

Alternate gene names: 182678504

Gene position: 1730451-1729777 (Counterclockwise)

Preceding gene: 182678505

Following gene: 182678503

Centisome position: 41.5

GC content: 64.0

Gene sequence:

>675_bases
ATGAGCAAAGGTAGAGATTTCCGGGGTCCCAAGAAACGTGGTTTTGATGATGATGGGCCCTCGCCCTATGATTCGCCGCG
CCCCAGCCGTACACCACGTCCTTCCTTCGGAGCCCCATCGGGAGGCGGCTTCGGCGGCGGCGCTCCCGACCTGGCGCCAT
CACCCTCGAGCCCACCCGTCGATGCTATCGTCAAATGGTTCAAGGGTGACAAGGGCTTCGGCTTCGTTGAGTTGAGCAAT
GGCGCCGGTGACGCCTTTCTCCATATCGGCGCGCTTCAGGCCGCCGGCTATGAGAGCGTGCCTCCGGGCGCCAAACTGAA
GGTCAATGTCGGCAATGGCATGAAGGGCGCTCAGGTGACCCGTGTGCTCGAAGTCGACACGGCCGGCGCCGCCGAGCGCG
CGCCGCAGCGTCCTTCTTTCGGCGATTCGCCGCGGCCGCCGCGCCGCGCCCCCGATCCTTCGAGCGCCGTGTCTGTCACC
GGTACGGTCAAATGGTTCGACGACAACAAGGGCTTTGGCTTCGTCCAGTCGAACGATGGCGGCAAGGACGTCTTCGTCCA
TATTTCCATCCTCGGCTCCTCGGGGGTGCAACACCTCGCCGAGGGCCAGGCCGTGACCATGCGTGTCGTCGATACGCCCA
AGGGACGTGAAGCCCTGTCGATCTCCCTCGACTAA

Upstream 100 bases:

>100_bases
ATTCCGGCCGAGGCAAAGAGAGTGCAGCCGGCCGGTTTTGAAGCGGAAAGTTTCCGCTTTTGGGCTGAGGCGAGAATAGG
CGCAGATAAGCAGGCATATC

Downstream 100 bases:

>100_bases
AAAGCATCATAATGGAGGGCCGTGCCATGCGGTCCCTCCATTCTCAAAAGAATCAAAAACTCCCGCCTCAAATCTGCGCC
GCCGCAGTCCGGTCCTCCCG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSKGRDFRGPKKRGFDDDGPSPYDSPRPSRTPRPSFGAPSGGGFGGGAPDLAPSPSSPPVDAIVKWFKGDKGFGFVELSN
GAGDAFLHIGALQAAGYESVPPGAKLKVNVGNGMKGAQVTRVLEVDTAGAAERAPQRPSFGDSPRPPRRAPDPSSAVSVT
GTVKWFDDNKGFGFVQSNDGGKDVFVHISILGSSGVQHLAEGQAVTMRVVDTPKGREALSISLD

Sequences:

>Translated_224_residues
MSKGRDFRGPKKRGFDDDGPSPYDSPRPSRTPRPSFGAPSGGGFGGGAPDLAPSPSSPPVDAIVKWFKGDKGFGFVELSN
GAGDAFLHIGALQAAGYESVPPGAKLKVNVGNGMKGAQVTRVLEVDTAGAAERAPQRPSFGDSPRPPRRAPDPSSAVSVT
GTVKWFDDNKGFGFVQSNDGGKDVFVHISILGSSGVQHLAEGQAVTMRVVDTPKGREALSISLD
>Mature_223_residues
SKGRDFRGPKKRGFDDDGPSPYDSPRPSRTPRPSFGAPSGGGFGGGAPDLAPSPSSPPVDAIVKWFKGDKGFGFVELSNG
AGDAFLHIGALQAAGYESVPPGAKLKVNVGNGMKGAQVTRVLEVDTAGAAERAPQRPSFGDSPRPPRRAPDPSSAVSVTG
TVKWFDDNKGFGFVQSNDGGKDVFVHISILGSSGVQHLAEGQAVTMRVVDTPKGREALSISLD

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=46.031746031746, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=46.875, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789979, Length=57, Percent_Identity=49.1228070175439, Blast_Score=60, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 23216; Mature: 23085

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGRDFRGPKKRGFDDDGPSPYDSPRPSRTPRPSFGAPSGGGFGGGAPDLAPSPSSPPV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
DAIVKWFKGDKGFGFVELSNGAGDAFLHIGALQAAGYESVPPGAKLKVNVGNGMKGAQVT
HHHHHHHCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCEEE
RVLEVDTAGAAERAPQRPSFGDSPRPPRRAPDPSSAVSVTGTVKWFDDNKGFGFVQSNDG
EEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCCC
GKDVFVHISILGSSGVQHLAEGQAVTMRVVDTPKGREALSISLD
CCEEEEEEEEECCCCHHHHHCCCEEEEEEEECCCCCEEEEEEEC
>Mature Secondary Structure 
SKGRDFRGPKKRGFDDDGPSPYDSPRPSRTPRPSFGAPSGGGFGGGAPDLAPSPSSPPV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
DAIVKWFKGDKGFGFVELSNGAGDAFLHIGALQAAGYESVPPGAKLKVNVGNGMKGAQVT
HHHHHHHCCCCCCEEEEECCCCCCEEEEEEEHHHCCCCCCCCCCEEEEECCCCCCCCEEE
RVLEVDTAGAAERAPQRPSFGDSPRPPRRAPDPSSAVSVTGTVKWFDDNKGFGFVQSNDG
EEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCCC
GKDVFVHISILGSSGVQHLAEGQAVTMRVVDTPKGREALSISLD
CCEEEEEEEEECCCCHHHHHCCCEEEEEEEECCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]