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The map label for this gene is ytfH [C]

Identifier: 182678466

GI number: 182678466

Start: 1692965

End: 1693360

Strand: Direct

Name: ytfH [C]

Synonym: Bind_1490

Alternate gene names: 182678466

Gene position: 1692965-1693360 (Clockwise)

Preceding gene: 182678463

Following gene: 182678468

Centisome position: 40.6

GC content: 62.37

Gene sequence:

>396_bases
ATGAAAAAGCCGAGCCAGGCCGGCCCTTTGGACCCGGCGGCCATCTGCCGGAGCTCGGACCCGTTGGCCGTGCGGGAGTT
GCTGACCAAGATCGGCGACAAGTGGACGATCTTCGTGATCCTCTCGCTCGACCTTCTCGGCGGGCGCGCCCGGTTTTCAG
AACTCGAACGCGCGGTTCCGGGGATTTCGCAGCGGATGCTCTCTTCGACCCTGAAGACTCTCGAACGCGACGGGCTGGTG
ATCCGGGAGCTGTTTCCCGAGGTGCCGCCCCGAGTCGAGTATGAGATGACGGATCTCGGAAAGAGCCTTTTGCACCCCAC
GCAGGGATTGGTGGATTGGGCCAAGGCGAACTGGGAGCAGGTCAGGGAAGCGCAATCGAGATACGATGCGAGATAG

Upstream 100 bases:

>100_bases
GTTCGCAAAGTTGCTTACAGAATGAGAGCTACCTATAAATCGGAAGCTTGCTTCAAAGAAGAAGGCACTTTGAGATCAGC
TGCTTACGTCGAGGTAAGTT

Downstream 100 bases:

>100_bases
CCCGTTGGTCGCGCGATAGTGGATGACTTCGCCTACACATCGGCCATACCGATGAAACAAGCCGCCTCGAAGGGCGGCTT
TCATTTGAATAACGGTTTAG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKPSQAGPLDPAAICRSSDPLAVRELLTKIGDKWTIFVILSLDLLGGRARFSELERAVPGISQRMLSSTLKTLERDGLV
IRELFPEVPPRVEYEMTDLGKSLLHPTQGLVDWAKANWEQVREAQSRYDAR

Sequences:

>Translated_131_residues
MKKPSQAGPLDPAAICRSSDPLAVRELLTKIGDKWTIFVILSLDLLGGRARFSELERAVPGISQRMLSSTLKTLERDGLV
IRELFPEVPPRVEYEMTDLGKSLLHPTQGLVDWAKANWEQVREAQSRYDAR
>Mature_131_residues
MKKPSQAGPLDPAAICRSSDPLAVRELLTKIGDKWTIFVILSLDLLGGRARFSELERAVPGISQRMLSSTLKTLERDGLV
IRELFPEVPPRVEYEMTDLGKSLLHPTQGLVDWAKANWEQVREAQSRYDAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=97, Percent_Identity=37.1134020618557, Blast_Score=78, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14744; Mature: 14744

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPSQAGPLDPAAICRSSDPLAVRELLTKIGDKWTIFVILSLDLLGGRARFSELERAVP
CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCEEEHHEEEHHHHCCHHHHHHHHHHCC
GISQRMLSSTLKTLERDGLVIRELFPEVPPRVEYEMTDLGKSLLHPTQGLVDWAKANWEQ
CHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCHHH
VREAQSRYDAR
HHHHHHHCCCC
>Mature Secondary Structure
MKKPSQAGPLDPAAICRSSDPLAVRELLTKIGDKWTIFVILSLDLLGGRARFSELERAVP
CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCEEEHHEEEHHHHCCHHHHHHHHHHCC
GISQRMLSSTLKTLERDGLVIRELFPEVPPRVEYEMTDLGKSLLHPTQGLVDWAKANWEQ
CHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCHHH
VREAQSRYDAR
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]