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The map label for this gene is yodB [H]

Identifier: 182678289

GI number: 182678289

Start: 1512998

End: 1513624

Strand: Direct

Name: yodB [H]

Synonym: Bind_1306

Alternate gene names: 182678289

Gene position: 1512998-1513624 (Clockwise)

Preceding gene: 182678285

Following gene: 182678290

Centisome position: 36.28

GC content: 56.14

Gene sequence:

>627_bases
ATGACGAACAATTCCTTACCGGCGGGTTTCGCCGCGGCCGAAGGCCAAGGCAGTCAGAAGCAAAAGGAGACCGCACGGTT
TCCCATTTATGACAGTTTCACGATCTTCCTGCATTGGGCGACCGTGCTGCTGGTCGTCATCCTCTACGCGCTCGCACAAA
TCTGGGGTCTTTTGGAGAAGGGCACGCCGCCGCGGCATGCTTTGCAGTCCCTGCATGTATCCTTGGGGATCGTGCTGACA
GTGGTCATCGTGGCCCGGCTTCTCTGGCGCGGTGGGCCTGGCCGCAAATTGCCGGAAGCCATTCCTGGATTTTTAGGATT
TGCCGCGAAGGCGGTGCATTATCTCCTTTATGCGATGCTCGTTGCTCAGACCGTACTCGGCTGGCTGTTTCGCTGGGCAC
AGGGTGAGATCCTTGGCTTTTTCGGCCTGTTTACCATTCCCTCGCCCTTCGTTTTCACGGTTGCGCAGCGCCAGACTTTT
GGGTCCCTGCATGATTTGCTGGGGACTTTAATCATCATCGTGGCGGCGGGACATGCTGGTGCAGCCCTGTTTCATCATTA
TGTATGTCATGATGGTGTCCTGGTGCGCATGCTTCCAGGGCTGCAAAAGCGTTTGACAAGGTCATAA

Upstream 100 bases:

>100_bases
CATTCCCGATTAGCATGAGGGAAATGGCTATCGGACTTCCTTTCACGCACCGTGTTGCGTGGACCGGTGGTCGCTTCCCT
TTTGACGAGAGCATGGGAAC

Downstream 100 bases:

>100_bases
AATACGAACGGGCCGCTCATCGATGATGCTGGATGCCGCGATCGCCGCAATCAATGAAATGTTCAGCAAGCCTTTCCGGG
CGGTCTTCTACAAGACGCTG

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTNNSLPAGFAAAEGQGSQKQKETARFPIYDSFTIFLHWATVLLVVILYALAQIWGLLEKGTPPRHALQSLHVSLGIVLT
VVIVARLLWRGGPGRKLPEAIPGFLGFAAKAVHYLLYAMLVAQTVLGWLFRWAQGEILGFFGLFTIPSPFVFTVAQRQTF
GSLHDLLGTLIIIVAAGHAGAALFHHYVCHDGVLVRMLPGLQKRLTRS

Sequences:

>Translated_208_residues
MTNNSLPAGFAAAEGQGSQKQKETARFPIYDSFTIFLHWATVLLVVILYALAQIWGLLEKGTPPRHALQSLHVSLGIVLT
VVIVARLLWRGGPGRKLPEAIPGFLGFAAKAVHYLLYAMLVAQTVLGWLFRWAQGEILGFFGLFTIPSPFVFTVAQRQTF
GSLHDLLGTLIIIVAAGHAGAALFHHYVCHDGVLVRMLPGLQKRLTRS
>Mature_207_residues
TNNSLPAGFAAAEGQGSQKQKETARFPIYDSFTIFLHWATVLLVVILYALAQIWGLLEKGTPPRHALQSLHVSLGIVLTV
VIVARLLWRGGPGRKLPEAIPGFLGFAAKAVHYLLYAMLVAQTVLGWLFRWAQGEILGFFGLFTIPSPFVFTVAQRQTFG
SLHDLLGTLIIIVAAGHAGAALFHHYVCHDGVLVRMLPGLQKRLTRS

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=169, Percent_Identity=32.5443786982249, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787296, Length=171, Percent_Identity=32.1637426900585, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 22766; Mature: 22635

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNNSLPAGFAAAEGQGSQKQKETARFPIYDSFTIFLHWATVLLVVILYALAQIWGLLEK
CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTPPRHALQSLHVSLGIVLTVVIVARLLWRGGPGRKLPEAIPGFLGFAAKAVHYLLYAML
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VAQTVLGWLFRWAQGEILGFFGLFTIPSPFVFTVAQRQTFGSLHDLLGTLIIIVAAGHAG
HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AALFHHYVCHDGVLVRMLPGLQKRLTRS
HHHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TNNSLPAGFAAAEGQGSQKQKETARFPIYDSFTIFLHWATVLLVVILYALAQIWGLLEK
CCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTPPRHALQSLHVSLGIVLTVVIVARLLWRGGPGRKLPEAIPGFLGFAAKAVHYLLYAML
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VAQTVLGWLFRWAQGEILGFFGLFTIPSPFVFTVAQRQTFGSLHDLLGTLIIIVAAGHAG
HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AALFHHYVCHDGVLVRMLPGLQKRLTRS
HHHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]