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The map label for this gene is hupD [H]

Identifier: 182678138

GI number: 182678138

Start: 1337225

End: 1337881

Strand: Direct

Name: hupD [H]

Synonym: Bind_1153

Alternate gene names: 182678138

Gene position: 1337225-1337881 (Clockwise)

Preceding gene: 182678137

Following gene: 182678139

Centisome position: 32.07

GC content: 60.88

Gene sequence:

>657_bases
ATGAATACAGAACCGCTAACAGGAGACGAACAGAACGAGGCCACGATCCTCGTTCTGGGCATTGGCAATATTCTTTGGGC
CGATGAGGGATTTGGTGTCCGTGTCGTGGAATATCTGGCGGAGAATTACACCTTCCCGGCCAAAGTGCGGCTGATGGATG
GCGGTACGCAGGGGCTGTTTCTTCTCTCCTATCTCGAAAATCTGGAGGGACTGGTGATCGTCGATGCGATCGATTTCGGC
CTGCCGCCCGCGACGCTGCATGAAGTGCAGGGTGACGATGTGCCGGCGACCATCGGCGCACGGAAAATGAGCCTGCATCA
GACCGGCTTTCAAGAAGTGTTGGCGCTCTTGGATTTGCGTGGCTGCGCGCCTCGTCGCCTGTCGCTGATCGGCGTGCAGC
CGGTCACCCTGGACGATTATGGCGGTGGCCTGACGCCGGAGGTTGCGGCGCAGGTGGAACCCGTCGCGCGACGTGTCTTG
GAGTGCTTGCGCGACGATTATGGGCTTGAGACCCTGAGCAAGACGGTCGAACCGAGTCAAGGCGAGCGTTTCATGGCTCC
GGCTGTGGCGCGGACGCCTTACGAAACGGAGCGGCCGGATGCCGAGATGGCGTGTCGCCACGGCGATGACAGGCTGCTCG
CGCGGTTGAAGGGCTGA

Upstream 100 bases:

>100_bases
CAGATTTGCTTCGGTCTGGCATGAATCTTGACCTTTGTTGTGGATCTATTCCCCAGAAATAATCGGATGACGCCTTCTTC
CGGCTGGAATCGACCTTTCC

Downstream 100 bases:

>100_bases
GAGCGTATGTGCATTGGCATTCCCATGCGGATCGTCAGCTTGGCGGGTGAAACCGCGCTCTGCGTCGCGGAAGGGCGGGA
AGAGCAAGTGGATCTCGCCT

Product: hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MNTEPLTGDEQNEATILVLGIGNILWADEGFGVRVVEYLAENYTFPAKVRLMDGGTQGLFLLSYLENLEGLVIVDAIDFG
LPPATLHEVQGDDVPATIGARKMSLHQTGFQEVLALLDLRGCAPRRLSLIGVQPVTLDDYGGGLTPEVAAQVEPVARRVL
ECLRDDYGLETLSKTVEPSQGERFMAPAVARTPYETERPDAEMACRHGDDRLLARLKG

Sequences:

>Translated_218_residues
MNTEPLTGDEQNEATILVLGIGNILWADEGFGVRVVEYLAENYTFPAKVRLMDGGTQGLFLLSYLENLEGLVIVDAIDFG
LPPATLHEVQGDDVPATIGARKMSLHQTGFQEVLALLDLRGCAPRRLSLIGVQPVTLDDYGGGLTPEVAAQVEPVARRVL
ECLRDDYGLETLSKTVEPSQGERFMAPAVARTPYETERPDAEMACRHGDDRLLARLKG
>Mature_218_residues
MNTEPLTGDEQNEATILVLGIGNILWADEGFGVRVVEYLAENYTFPAKVRLMDGGTQGLFLLSYLENLEGLVIVDAIDFG
LPPATLHEVQGDDVPATIGARKMSLHQTGFQEVLALLDLRGCAPRRLSLIGVQPVTLDDYGGGLTPEVAAQVEPVARRVL
ECLRDDYGLETLSKTVEPSQGERFMAPAVARTPYETERPDAEMACRHGDDRLLARLKG

Specific function: Not known. Could be involved in the processing of hydrogenase [H]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1787209, Length=134, Percent_Identity=55.2238805970149, Blast_Score=159, Evalue=1e-40,
Organism=Escherichia coli, GI1789367, Length=160, Percent_Identity=42.5, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 23764; Mature: 23764

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEPLTGDEQNEATILVLGIGNILWADEGFGVRVVEYLAENYTFPAKVRLMDGGTQGLF
CCCCCCCCCCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHH
LLSYLENLEGLVIVDAIDFGLPPATLHEVQGDDVPATIGARKMSLHQTGFQEVLALLDLR
HHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GCAPRRLSLIGVQPVTLDDYGGGLTPEVAAQVEPVARRVLECLRDDYGLETLSKTVEPSQ
CCCCCCEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
GERFMAPAVARTPYETERPDAEMACRHGDDRLLARLKG
CCEEECCHHHCCCCCCCCCCHHHHHHCCCHHHHHCCCC
>Mature Secondary Structure
MNTEPLTGDEQNEATILVLGIGNILWADEGFGVRVVEYLAENYTFPAKVRLMDGGTQGLF
CCCCCCCCCCCCCEEEEEEECCCEEECCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHH
LLSYLENLEGLVIVDAIDFGLPPATLHEVQGDDVPATIGARKMSLHQTGFQEVLALLDLR
HHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GCAPRRLSLIGVQPVTLDDYGGGLTPEVAAQVEPVARRVLECLRDDYGLETLSKTVEPSQ
CCCCCCEEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
GERFMAPAVARTPYETERPDAEMACRHGDDRLLARLKG
CCEEECCHHHCCCCCCCCCCHHHHHHCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Ni [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]