| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is speF [H]
Identifier: 182677920
GI number: 182677920
Start: 1058915
End: 1061272
Strand: Direct
Name: speF [H]
Synonym: Bind_0928
Alternate gene names: 182677920
Gene position: 1058915-1061272 (Clockwise)
Preceding gene: 182677919
Following gene: 182677921
Centisome position: 25.39
GC content: 59.03
Gene sequence:
>2358_bases ATGGACTATTTCAGACGATTCACGTTCCTGTTCGCGATACCGGCCTTTGATGCGGACGATCTCGAAGGCGTCCGATTCAA TCAGATCGTCGACGAGATCGAGCGCTCCGGTTTCGAAGTCGTCAAGGCCCGCAAGCTCGAAGACGCCGAGATTGCGGTGC AGACCGACGCCGCCATCGGATGCATGGTGGTTGACTGGGGCAAGAAGGGCCTCGAGGGCAAGACGGCCGCGCTGATCAAT CTCATGCGCCGCCGTGGCCTCGACTTTCCGATCATCCTCTTGATCCGCCGCAAGCGGTTCGAGGATCTGCCCGTCGAAGT GCTCGACTTCATCGATGGCTATGTCTTTCTCTCGGAAGAGACACCTGCCTTCATCGCCAAGAATCTCATCAGCCGTCTCA AGCAATATGCCGAGACGTTGAAGACGCCATTCTTCGGCGCACTCGTCGATTATGCCCAAGAAGGCAATCAGCTATGGACC TGTCCGGGCCACAATGGGGGCGTGTTCTATGGCCGTAGCCCGATTGGCCGGGTCTTCATGGAGCATCTCGGAGAGGCGGT GTTCCGCGACGACCTCGACAATTCAGTGCTCGATCTTGGCGACCTCTTGACCCACGAAGGGCCGGCTTTGCAGGCCCAAA AGGAAGCCGCCCGGATTTTTGGCGCGGAGAAGACTTATTTCGTCCTCAACGGCACCTCGACCTCCAATAAGGTGGCGCTG TCCGCGCTCGTGACCGACGGCGATCTGGTGTTGTTCGACCGTAACAATCACAAGGCCGCCCATCATGGCGCCTTGATGAT CAGCGGCGGCATTCCGGTCTATCTTCCGACGGTGCGTAATGCCTTCGGCTTGATCGGCCCAATGCGCTGGGATGCTTTCG ATGAGAAAGCACTGCGCGAGCGTATCCGTACTCATCCGCTGGTCAAGGATGCCGAGGCTTGGCGCCGGCCGCGCCCGTTC CGCGTCGCCGTGGTCGAACAATGCACTTATGATGGCACGATCCACAGCGCCGAGATGATCCTCCAGCGCATCGGACATCT TTGCGATTACATCCTGTTCGATGAGGCCTGGGCTGGCTTCATGAAGTTTCATCCGCTCTATGCAGGGCGTTTTGCCATGG GGCTTTCAGACCTTGGTCCTGACGCCCCCGGTATCATCGCCACCCAGTCGACCCATAAGCAATTGGCCAGCTTCTCGCAG GCCTCGCAGATCCATATCAAGGATCGTCACATCAAGGGGCAAAAGCGCCGTATCGAGCATCGCCGCTTCAACGAGAGCTT CATGCAATATGCGTCGACCTCGCCTTTCTATCCGCTGTTCGCATCGCTGGATGTCGGCGCGCAGATGATGAAGGGGCGTT CGGGTGAGGTGCTATGGGACGATACGATCAGGCTGGGTATTGAGCTCCGCAAGAAGATTCGCGCCATAAAGCGTGAGTTC GAGGAGAAAGAAATACGTCCCGAGCGGCGCTGGTTCTTCGAGTCTTTCGTGCCCGACCGTATCATGATCCCCGATGTGTC CCGCGAGGGCGCGGTGCATGATGTCGCCTGGGAGGCGATCGGGACAGACCAGCTCGCCACCGACCCTCTTTATTGGCAAC TCGCGCCGAGTGCCGCCTGGCACGGCTTCGCCGACATGGCGCCGGGCTTTGCCATGACCGACCCCAACAAGCTGACGCTG CTGACGCCTGGCTTCGACCGCGCCACTGGCAATTATGCCGAACATGGCATCCCAGCCCCGGTTGTCGCCCAATATTTGCG CGAGAATCGCATTGTCGCGGAAAAGAATGACCTCAACTCGCTGCTCTTCCTGCTGACGCCTGGAGTGGAGGCCAGCAAGG CCGGCACGCTGGTTAGCGGGCTCGTCGCTTTCAAGAAACTGCATGATGATAATGTGCTGCTGGAAGAAGCCATTCCCGAA TTCTACCGGAGAAGGCCGGCACGTTATGCCGGGGAGCGCCTGCGCGATCTCTGCGCGGACATGCATCGTTTCTTCCGCGA CGCGGATGTCAGCGCTTTGCAGGCGAAGCAGTTTTCGCCTGACCATCTGCCGGAGATCGCCTTGTCTCCACATGATGCGG CGCGTTGTCTCGTACGCAATGACGTCGATTACCTCCCCATCGATGCCATCTTTGGCCGGATCGCCACAACACCGTTCGTG GTCTATCCGCCTGGGATCGCGACGATCGTGCCGGGTGAGCGTATCACTGAGCGCGCGCAGCCGATGATCGACTATCTCAA AATGTTCGAGGCGAGCTTCAATGCCTTCCCCGGCTTCGAGGTGGAGATTCAAGGCGTTTATCGCGAGGTGGATGCTGGCG GCCGCGTCCGGCTTTACACTTACGTGGTCTCCGAATAG
Upstream 100 bases:
>100_bases CTCCGGTGCATTGGTCCGCCCGATGCGCCATCGCCTTCGATAGTCACCGCTCTGTCATGGAATGAGCCGACATCTCCCCT CGGATATGACCGAGGGATGC
Downstream 100 bases:
>100_bases GAGAGCATGTTCCAAGACGCATGCTTCATGAGACTTGGTGTGATACCAACGGTCATAATCAATGACCGTTGGACCGCTCT TGAATTTTCGCTCTCGCTTT
Product: ornithine decarboxylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MDYFRRFTFLFAIPAFDADDLEGVRFNQIVDEIERSGFEVVKARKLEDAEIAVQTDAAIGCMVVDWGKKGLEGKTAALIN LMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEETPAFIAKNLISRLKQYAETLKTPFFGALVDYAQEGNQLWT CPGHNGGVFYGRSPIGRVFMEHLGEAVFRDDLDNSVLDLGDLLTHEGPALQAQKEAARIFGAEKTYFVLNGTSTSNKVAL SALVTDGDLVLFDRNNHKAAHHGALMISGGIPVYLPTVRNAFGLIGPMRWDAFDEKALRERIRTHPLVKDAEAWRRPRPF RVAVVEQCTYDGTIHSAEMILQRIGHLCDYILFDEAWAGFMKFHPLYAGRFAMGLSDLGPDAPGIIATQSTHKQLASFSQ ASQIHIKDRHIKGQKRRIEHRRFNESFMQYASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAIKREF EEKEIRPERRWFFESFVPDRIMIPDVSREGAVHDVAWEAIGTDQLATDPLYWQLAPSAAWHGFADMAPGFAMTDPNKLTL LTPGFDRATGNYAEHGIPAPVVAQYLRENRIVAEKNDLNSLLFLLTPGVEASKAGTLVSGLVAFKKLHDDNVLLEEAIPE FYRRRPARYAGERLRDLCADMHRFFRDADVSALQAKQFSPDHLPEIALSPHDAARCLVRNDVDYLPIDAIFGRIATTPFV VYPPGIATIVPGERITERAQPMIDYLKMFEASFNAFPGFEVEIQGVYREVDAGGRVRLYTYVVSE
Sequences:
>Translated_785_residues MDYFRRFTFLFAIPAFDADDLEGVRFNQIVDEIERSGFEVVKARKLEDAEIAVQTDAAIGCMVVDWGKKGLEGKTAALIN LMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEETPAFIAKNLISRLKQYAETLKTPFFGALVDYAQEGNQLWT CPGHNGGVFYGRSPIGRVFMEHLGEAVFRDDLDNSVLDLGDLLTHEGPALQAQKEAARIFGAEKTYFVLNGTSTSNKVAL SALVTDGDLVLFDRNNHKAAHHGALMISGGIPVYLPTVRNAFGLIGPMRWDAFDEKALRERIRTHPLVKDAEAWRRPRPF RVAVVEQCTYDGTIHSAEMILQRIGHLCDYILFDEAWAGFMKFHPLYAGRFAMGLSDLGPDAPGIIATQSTHKQLASFSQ ASQIHIKDRHIKGQKRRIEHRRFNESFMQYASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAIKREF EEKEIRPERRWFFESFVPDRIMIPDVSREGAVHDVAWEAIGTDQLATDPLYWQLAPSAAWHGFADMAPGFAMTDPNKLTL LTPGFDRATGNYAEHGIPAPVVAQYLRENRIVAEKNDLNSLLFLLTPGVEASKAGTLVSGLVAFKKLHDDNVLLEEAIPE FYRRRPARYAGERLRDLCADMHRFFRDADVSALQAKQFSPDHLPEIALSPHDAARCLVRNDVDYLPIDAIFGRIATTPFV VYPPGIATIVPGERITERAQPMIDYLKMFEASFNAFPGFEVEIQGVYREVDAGGRVRLYTYVVSE >Mature_785_residues MDYFRRFTFLFAIPAFDADDLEGVRFNQIVDEIERSGFEVVKARKLEDAEIAVQTDAAIGCMVVDWGKKGLEGKTAALIN LMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEETPAFIAKNLISRLKQYAETLKTPFFGALVDYAQEGNQLWT CPGHNGGVFYGRSPIGRVFMEHLGEAVFRDDLDNSVLDLGDLLTHEGPALQAQKEAARIFGAEKTYFVLNGTSTSNKVAL SALVTDGDLVLFDRNNHKAAHHGALMISGGIPVYLPTVRNAFGLIGPMRWDAFDEKALRERIRTHPLVKDAEAWRRPRPF RVAVVEQCTYDGTIHSAEMILQRIGHLCDYILFDEAWAGFMKFHPLYAGRFAMGLSDLGPDAPGIIATQSTHKQLASFSQ ASQIHIKDRHIKGQKRRIEHRRFNESFMQYASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAIKREF EEKEIRPERRWFFESFVPDRIMIPDVSREGAVHDVAWEAIGTDQLATDPLYWQLAPSAAWHGFADMAPGFAMTDPNKLTL LTPGFDRATGNYAEHGIPAPVVAQYLRENRIVAEKNDLNSLLFLLTPGVEASKAGTLVSGLVAFKKLHDDNVLLEEAIPE FYRRRPARYAGERLRDLCADMHRFFRDADVSALQAKQFSPDHLPEIALSPHDAARCLVRNDVDYLPIDAIFGRIATTPFV VYPPGIATIVPGERITERAQPMIDYLKMFEASFNAFPGFEVEIQGVYREVDAGGRVRLYTYVVSE
Specific function: Spermidine biosynthesis from ornithine. [C]
COG id: COG1982
COG function: function code E; Arginine/lysine/ornithine decarboxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]
Homologues:
Organism=Escherichia coli, GI1786909, Length=713, Percent_Identity=43.3380084151473, Blast_Score=573, Evalue=1e-164, Organism=Escherichia coli, GI87082193, Length=708, Percent_Identity=43.6440677966102, Blast_Score=565, Evalue=1e-162, Organism=Escherichia coli, GI221142684, Length=751, Percent_Identity=32.2237017310253, Blast_Score=422, Evalue=1e-119, Organism=Escherichia coli, GI1786384, Length=744, Percent_Identity=31.5860215053763, Blast_Score=389, Evalue=1e-109, Organism=Escherichia coli, GI1790573, Length=746, Percent_Identity=30.5630026809651, Blast_Score=383, Evalue=1e-107,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR005308 - InterPro: IPR011193 - InterPro: IPR000310 - InterPro: IPR008286 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]
EC number: =4.1.1.17 [H]
Molecular weight: Translated: 88590; Mature: 88590
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS00703 OKR_DC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDYFRRFTFLFAIPAFDADDLEGVRFNQIVDEIERSGFEVVKARKLEDAEIAVQTDAAIG CCHHHHEEHHHEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEE CMVVDWGKKGLEGKTAALINLMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEE EEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHCCEEEECCC TPAFIAKNLISRLKQYAETLKTPFFGALVDYAQEGNQLWTCPGHNGGVFYGRSPIGRVFM CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCEEECCCHHHHHHH EHLGEAVFRDDLDNSVLDLGDLLTHEGPALQAQKEAARIFGAEKTYFVLNGTSTSNKVAL HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEE SALVTDGDLVLFDRNNHKAAHHGALMISGGIPVYLPTVRNAFGLIGPMRWDAFDEKALRE EEEEECCCEEEEECCCCCCCCCCEEEEECCCCEEECCHHHHHHCCCCCCCCHHHHHHHHH RIRTHPLVKDAEAWRRPRPFRVAVVEQCTYDGTIHSAEMILQRIGHLCDYILFDEAWAGF HHHHCCCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MKFHPLYAGRFAMGLSDLGPDAPGIIATQSTHKQLASFSQASQIHIKDRHIKGQKRRIEH HHHCHHHHHHHHHCHHHCCCCCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH RRFNESFMQYASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAIKREF HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH EEKEIRPERRWFFESFVPDRIMIPDVSREGAVHDVAWEAIGTDQLATDPLYWQLAPSAAW HHHHCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHH HGFADMAPGFAMTDPNKLTLLTPGFDRATGNYAEHGIPAPVVAQYLRENRIVAEKNDLNS CCHHHHCCCCEECCCCEEEEECCCCCCCCCCCHHCCCCHHHHHHHHHHCCCEEECCCCCC LLFLLTPGVEASKAGTLVSGLVAFKKLHDDNVLLEEAIPEFYRRRPARYAGERLRDLCAD EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MHRFFRDADVSALQAKQFSPDHLPEIALSPHDAARCLVRNDVDYLPIDAIFGRIATTPFV HHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCEE VYPPGIATIVPGERITERAQPMIDYLKMFEASFNAFPGFEVEIQGVYREVDAGGRVRLYT EECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCEEEEEE YVVSE EEECC >Mature Secondary Structure MDYFRRFTFLFAIPAFDADDLEGVRFNQIVDEIERSGFEVVKARKLEDAEIAVQTDAAIG CCHHHHEEHHHEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCEE CMVVDWGKKGLEGKTAALINLMRRRGLDFPIILLIRRKRFEDLPVEVLDFIDGYVFLSEE EEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCHHHHHHHCCEEEECCC TPAFIAKNLISRLKQYAETLKTPFFGALVDYAQEGNQLWTCPGHNGGVFYGRSPIGRVFM CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCCCCCEEECCCHHHHHHH EHLGEAVFRDDLDNSVLDLGDLLTHEGPALQAQKEAARIFGAEKTYFVLNGTSTSNKVAL HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEE SALVTDGDLVLFDRNNHKAAHHGALMISGGIPVYLPTVRNAFGLIGPMRWDAFDEKALRE EEEEECCCEEEEECCCCCCCCCCEEEEECCCCEEECCHHHHHHCCCCCCCCHHHHHHHHH RIRTHPLVKDAEAWRRPRPFRVAVVEQCTYDGTIHSAEMILQRIGHLCDYILFDEAWAGF HHHHCCCCCCHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MKFHPLYAGRFAMGLSDLGPDAPGIIATQSTHKQLASFSQASQIHIKDRHIKGQKRRIEH HHHCHHHHHHHHHCHHHCCCCCCCEEEECHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH RRFNESFMQYASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAIKREF HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH EEKEIRPERRWFFESFVPDRIMIPDVSREGAVHDVAWEAIGTDQLATDPLYWQLAPSAAW HHHHCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHH HGFADMAPGFAMTDPNKLTLLTPGFDRATGNYAEHGIPAPVVAQYLRENRIVAEKNDLNS CCHHHHCCCCEECCCCEEEEECCCCCCCCCCCHHCCCCHHHHHHHHHHCCCEEECCCCCC LLFLLTPGVEASKAGTLVSGLVAFKKLHDDNVLLEEAIPEFYRRRPARYAGERLRDLCAD EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH MHRFFRDADVSALQAKQFSPDHLPEIALSPHDAARCLVRNDVDYLPIDAIFGRIATTPFV HHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCEE VYPPGIATIVPGERITERAQPMIDYLKMFEASFNAFPGFEVEIQGVYREVDAGGRVRLYT EECCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHCCCCCEEEEEE YVVSE EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1939141; 8905232; 9278503 [H]