Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 182677858

GI number: 182677858

Start: 985645

End: 986757

Strand: Direct

Name: ybbD [H]

Synonym: Bind_0865

Alternate gene names: 182677858

Gene position: 985645-986757 (Clockwise)

Preceding gene: 182677853

Following gene: 182677865

Centisome position: 23.64

GC content: 59.84

Gene sequence:

>1113_bases
ATGCTCCAGAATATCCGCGCCCGAAATTCCATTGCTGAAGTCGGCACTCATTTTCTCGTTGGTCTGCGGCCGACGCCAGA
ACTGCATGATCAGGATCGGGCCTTGCTGGCTGATCTGCGGCCGGCAGGGGTCATCCTCTATAAAAGCAATTTTCGGCATG
ACCTGCCTTATGCGCAATGGCTCGAAATCCATGCGCGGCTCATCGAAGACATTTACGCGGCTTGCGGTCGGGAGCATCTC
TGGATCGGCATCGACCATGAGGGTGGCCGGGTGTGCCGGACGCCGGCGCCAATCACGCGTTTTGCCTATGCGGCGCATTG
GGGCGATTGTGCCGCCGCCGTGGGGCAGGCGATGGGCTGCGAACTCGCCTCGCTCGGCATCAATCTGAATTTCGCACCGG
TCCTCGACATTCACACTAATCCGGCCAATCCCGTGATCGGCGAGCGGGCCTTCGCCACGACGCCCGAGGCGGTGACGCCG
CTGGCGCTTGGTTTCCTGCGGGCCATGCAGGCGGAAAATGTTCTCGGCTGCGGCAAGCATTTTCCAGGGCATGGCGACAC
ATCAGTCGATTCGCATTATGGCCTGCCGAGCCAGAATTGTAGCCTCGAAGATTTGCGGCAGCGTGAATTGAAGCCCTTCA
TCGCCGCAATCGAGGCCGGCCTTTCGATGATCATGACCTCGCATATTCTGTTTCCGGCGATCGATCCCGATTTTCCGGTG
ACGCTTTCGCGGCGTTTCTGCACTGAACTGTTGCGCGAGGAATTGGGCTATTCCGGCGTCGTCGTTTCGGACGATATCGG
CATGGGTGCGATGAATCAGTTTTTTGCCGAGCCCACGGCCGCCGCGCGTCTCATCGCGGCGGGCTGCGATCTTCTCATGG
TCTGCGCCCATTGGACCGAGACGGAGCGGGTTCGGGATTTCGCGGAAAGCATTGTGCGGGCGCGCGATAAAGGTGAGATC
ACACCCGATCAACTGACCGTATCAAAGGTGCGGATCGATGGTTTGCTCAGCCAGGCGCCGCGCAATCCTGTACGGACTCT
GGCCCCTCAGATTTTCGCGCGCCATGCAGAAGCTGGCCCTCTGTTCGCGGCCAAGACGGTCGAGGTGATTTAA

Upstream 100 bases:

>100_bases
TAGGTAAATTCTCTGTAGTTTCAGTAGTTTCAAACTTATGGACCATAGGCCAAAACGCTAAACGCTTTTGGCGCCGATTT
GTTCGCTTGTGGAAAGTCCG

Downstream 100 bases:

>100_bases
ATCACTTGCCTTTGCGTCGGTCAGGATTTCGTCGCGGCATCGGCCTGGACGATTGGCTTTTTCGCCGGTGTGGCGTGCGA
GCCACGCGCATAATGCTGGG

Product: glycoside hydrolase family 3 protein

Products: N-acetylglucosamin; anhydro-N-acetylmuramic acid [C]

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MLQNIRARNSIAEVGTHFLVGLRPTPELHDQDRALLADLRPAGVILYKSNFRHDLPYAQWLEIHARLIEDIYAACGREHL
WIGIDHEGGRVCRTPAPITRFAYAAHWGDCAAAVGQAMGCELASLGINLNFAPVLDIHTNPANPVIGERAFATTPEAVTP
LALGFLRAMQAENVLGCGKHFPGHGDTSVDSHYGLPSQNCSLEDLRQRELKPFIAAIEAGLSMIMTSHILFPAIDPDFPV
TLSRRFCTELLREELGYSGVVVSDDIGMGAMNQFFAEPTAAARLIAAGCDLLMVCAHWTETERVRDFAESIVRARDKGEI
TPDQLTVSKVRIDGLLSQAPRNPVRTLAPQIFARHAEAGPLFAAKTVEVI

Sequences:

>Translated_370_residues
MLQNIRARNSIAEVGTHFLVGLRPTPELHDQDRALLADLRPAGVILYKSNFRHDLPYAQWLEIHARLIEDIYAACGREHL
WIGIDHEGGRVCRTPAPITRFAYAAHWGDCAAAVGQAMGCELASLGINLNFAPVLDIHTNPANPVIGERAFATTPEAVTP
LALGFLRAMQAENVLGCGKHFPGHGDTSVDSHYGLPSQNCSLEDLRQRELKPFIAAIEAGLSMIMTSHILFPAIDPDFPV
TLSRRFCTELLREELGYSGVVVSDDIGMGAMNQFFAEPTAAARLIAAGCDLLMVCAHWTETERVRDFAESIVRARDKGEI
TPDQLTVSKVRIDGLLSQAPRNPVRTLAPQIFARHAEAGPLFAAKTVEVI
>Mature_370_residues
MLQNIRARNSIAEVGTHFLVGLRPTPELHDQDRALLADLRPAGVILYKSNFRHDLPYAQWLEIHARLIEDIYAACGREHL
WIGIDHEGGRVCRTPAPITRFAYAAHWGDCAAAVGQAMGCELASLGINLNFAPVLDIHTNPANPVIGERAFATTPEAVTP
LALGFLRAMQAENVLGCGKHFPGHGDTSVDSHYGLPSQNCSLEDLRQRELKPFIAAIEAGLSMIMTSHILFPAIDPDFPV
TLSRRFCTELLREELGYSGVVVSDDIGMGAMNQFFAEPTAAARLIAAGCDLLMVCAHWTETERVRDFAESIVRARDKGEI
TPDQLTVSKVRIDGLLSQAPRNPVRTLAPQIFARHAEAGPLFAAKTVEVI

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=320, Percent_Identity=33.125, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: NA

Molecular weight: Translated: 40456; Mature: 40456

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQNIRARNSIAEVGTHFLVGLRPTPELHDQDRALLADLRPAGVILYKSNFRHDLPYAQW
CCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCHHHH
LEIHARLIEDIYAACGREHLWIGIDHEGGRVCRTPAPITRFAYAAHWGDCAAAVGQAMGC
HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
ELASLGINLNFAPVLDIHTNPANPVIGERAFATTPEAVTPLALGFLRAMQAENVLGCGKH
CHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCC
FPGHGDTSVDSHYGLPSQNCSLEDLRQRELKPFIAAIEAGLSMIMTSHILFPAIDPDFPV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
TLSRRFCTELLREELGYSGVVVSDDIGMGAMNQFFAEPTAAARLIAAGCDLLMVCAHWTE
HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCHHHHHHHHHHCHHHHHHHHCCCH
TERVRDFAESIVRARDKGEITPDQLTVSKVRIDGLLSQAPRNPVRTLAPQIFARHAEAGP
HHHHHHHHHHHHHHHCCCCCCHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
LFAAKTVEVI
EEECCEEECC
>Mature Secondary Structure
MLQNIRARNSIAEVGTHFLVGLRPTPELHDQDRALLADLRPAGVILYKSNFRHDLPYAQW
CCCCCHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCHHHH
LEIHARLIEDIYAACGREHLWIGIDHEGGRVCRTPAPITRFAYAAHWGDCAAAVGQAMGC
HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
ELASLGINLNFAPVLDIHTNPANPVIGERAFATTPEAVTPLALGFLRAMQAENVLGCGKH
CHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCC
FPGHGDTSVDSHYGLPSQNCSLEDLRQRELKPFIAAIEAGLSMIMTSHILFPAIDPDFPV
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
TLSRRFCTELLREELGYSGVVVSDDIGMGAMNQFFAEPTAAARLIAAGCDLLMVCAHWTE
HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCHHHHHHHHHHCHHHHHHHHCCCH
TERVRDFAESIVRARDKGEITPDQLTVSKVRIDGLLSQAPRNPVRTLAPQIFARHAEAGP
HHHHHHHHHHHHHHHCCCCCCHHHEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
LFAAKTVEVI
EEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Cell Wall [C]

Specific reaction: Cell Wall = N-acetylglucosamin + anhydro-N-acetylmuramic acid [C]

General reaction: Hydrolyse [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]