| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is lptD [H]
Identifier: 182677645
GI number: 182677645
Start: 732808
End: 735486
Strand: Direct
Name: lptD [H]
Synonym: Bind_0652
Alternate gene names: 182677645
Gene position: 732808-735486 (Clockwise)
Preceding gene: 182677644
Following gene: 182677646
Centisome position: 17.57
GC content: 55.28
Gene sequence:
>2679_bases ATGGGGCGGCGTTTTTGCCCCGTAAATCCAGGCTTGTCGAGGACAAAGACCCGACACGGTTCCAGGGTTCGTGGCTTTTG GTGTTCCGCGGTCTTGTCGCCATCGATTCTGGTCGTGGTCTTGTCGGGAATCGGCATGTCCGCTTTGTTCGACGCCGCTG CGCTTGCCGCGCCGGCGAATGCGGATGCACGCGCCCAAAAAGCCACTGTCCCGGCCGCCGGATCTCCAGCGGGCCAAGTG TCTCCCGCCAATGAAGCATCGCCGCCCAAAAAAGAACGGATGCTCGTTGAGGCGGCGGAAATGCGTTACGATGCCGAAAA GGACACTGTCGCCGCCGTCGGCAATGCTCAGGTCTATCTGGATGGCCGGGTGCTCGAGGCTGATCGGGTCACCTACGAGC GCAAGACAGGACGCGTCTATGCCGAGGGTCATGCGAAAATGACCGAGCGTGACGGCAGCGTCATGTATGGCGAGCGTTTC GACCTGAGCGATGATTTTCGTGACGGTTTCGTCGAGAGCTTGCGCTACGAAAGCGCGGATAAGACCTATTTCAGCGCCCC GCATATGGAACGGATCGCCGAGGATACGGCGGTCTTCGACAAAGGCACCTATACGGCCTGTAAGCCCTGCCAAGACAATC CCGACCGGCCGCGATTCTGGCAGGTGCGGGCCAAGCGCATCGTTCACAAGAACGATGAGCATATGATTTATTACGAGGAC GCATCGCTGGAACTGCTTGGCATTCCCCTCGCCAGCATGCCGTTCTTCTCGAGCCCAGACCCGACGGTCACCCGCAAATC CGGCATTCTCTCGCCGCATTATCTCAATAAAAGCCGTCTCGGCTATGGGGTAGGGGTGCCGATCTTCTGGGCGCTCGCGC CCAATTACGATATTACCGTGACGCCAACGGCCTATTCGGAACAGGGCTTTTTCGGTAGCGCCGAATGGCGCCATCGGCTC GAAAACGGATACTACTACATTCGCGGCAACGGTATTGTGGAAAGTAATCCCTATGCCTTCCCTGCCTCACCCTGGGGATC GGGCAGCCATCGTTCGCGTGGCGATCTGGAAAGCAAGGGCCAGTTCGCGCTGTCCGACTATTGGAAATTCGGCTGGGAAT TCACGCTGCTTTCGGACAAATGGTTCCTGTGGGATTATCAGGTTTCAACCCAGACGCTGTCGTCCAATTACATCGCCGAA TCGACGTCCACCGTCTATCTCACGGGGCAGGCCGATCGCGGCTTTTTCGATCTGCGCGGTTATCATTTCACGGGCCTGTC GAGCCATGACTTCCAGCCGCAGCAACCCTGGGTGCGGCCGGTCTGGGACTATAACAAGACCTTCGACATCGATCCTGAAA AGACCCATGGCATTGGCGGCCAGGCCGAGGTCAATTTCAATCTTACGAGCCTGTCCGCAGCCTCCGCGAGCTATCAGGCC GTCGGCCCAAGGCAATTGGATAGTGCTTATAACCTCTATGACATCTGCAATAATTATCAGCCGGGCCGTACGAACGGTGA TTGCCTCCTGCGTGGCATCGGCGGTGATTATACGCGCGCGACACTCGAGACATCTTGGAAACGCAAGATTGTCGATCCGC TTGGTGAAGTCTGGACGCCTTTTGCCTTCGCTCGTTTCAATGGGCAATGGCTCAATTTGAATACGACAAACAGCTATACA TTTTCCAATGGTGTCACCAGTTCGACCTATACCAACGCCTCGCAACTGGCGTTTCTTGGCAATCGAGCCTCGGCTTTCTA TGGTCAATTCACCCCCGGGGCCGGGCTTGAATATCGCTATCCGCTCTTTGCCAAGACCAGCATAGGCACGCTGACCGTCG AACCGATCGGGCAGATCATTCTGCGTCCGAACAGCCAGATTGGCTATAATTCGCTCGTCAATCTCGATGCGCAAAGTCTG GTCTTCGACACATCGAATCTCTTCGAGTGGAACAAGTTTTCCGGTTACGACCGTTTCGAAAACGGCATCCGCGCCAATTA CGGCGGTCAGGCGATGTTGACTTTCGACAATGGCGGCTATGCAAGCCTGATCGCCGGACAATCCTATCAAGTGGCTGGTC AGAATGCTTATGCCACGCCGGATGCGGCCAATGTCGGCTTGAACTCTGGTCTCGATACGCGCTTGTCTGATTATGTCGGC TCCTTCACGATCGCCCCATCCTCGGCCTTTGCTTTGACGGCTCAGGGCCGTTTCAATGTGGATACATTCGCGCCGCGGCG TATCGATGTCATTGGGACTTACAATCTCGGTGCCTGGACCGGTTCGGTCCAATATGCCAATTATACGCAACAGCCGGAAA TTGGTTATGACGTTCGCCGCCAGGGTCTGTCAGTGAGTTCGCGCTACCAGATCAATGATAATTATTTTGTCCAGGGTAAT ATCACCTTCGACATGACCCGGCATTTTTATCCGCCCGATATTATCGGTAACACGCACCCAGCCCTGTTCTACCCGGCGAG CTATGGCATCAGCGGCGGTTATCAGGATGACTGCACGACCTTCAGCTTGATGTATAATTCTTTCGATCAGGACACGGGCA GCGGCACATTGTATCGTAACCAGACTTTCCTTGTTTCCTTTCAATTGCGAACATTGGGAGAATTCAAGTTCAGCAAGGCG TTTACGAATTACAATACGCTCGATGGCGTGAAATATTGA
Upstream 100 bases:
>100_bases GCACTTCAGGGTTGTTGAGTGCCCCGATCGCCGCTTGGTCTCCCGCTGTCGTTGCAAGTATGCTCGGCGCGTTAGCCTTG CTGAATCAGGAGGATGGTTG
Downstream 100 bases:
>100_bases TCGCCCGGGCCATCTGAAGCGCGCGTGATTTCGGGGGCCGCGCAGAGACGAAACGGATTAAAAGGAAGACGTATAACGAT GAAAACAGCCGGCCGTTTCT
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 892; Mature: 891
Protein sequence:
>892_residues MGRRFCPVNPGLSRTKTRHGSRVRGFWCSAVLSPSILVVVLSGIGMSALFDAAALAAPANADARAQKATVPAAGSPAGQV SPANEASPPKKERMLVEAAEMRYDAEKDTVAAVGNAQVYLDGRVLEADRVTYERKTGRVYAEGHAKMTERDGSVMYGERF DLSDDFRDGFVESLRYESADKTYFSAPHMERIAEDTAVFDKGTYTACKPCQDNPDRPRFWQVRAKRIVHKNDEHMIYYED ASLELLGIPLASMPFFSSPDPTVTRKSGILSPHYLNKSRLGYGVGVPIFWALAPNYDITVTPTAYSEQGFFGSAEWRHRL ENGYYYIRGNGIVESNPYAFPASPWGSGSHRSRGDLESKGQFALSDYWKFGWEFTLLSDKWFLWDYQVSTQTLSSNYIAE STSTVYLTGQADRGFFDLRGYHFTGLSSHDFQPQQPWVRPVWDYNKTFDIDPEKTHGIGGQAEVNFNLTSLSAASASYQA VGPRQLDSAYNLYDICNNYQPGRTNGDCLLRGIGGDYTRATLETSWKRKIVDPLGEVWTPFAFARFNGQWLNLNTTNSYT FSNGVTSSTYTNASQLAFLGNRASAFYGQFTPGAGLEYRYPLFAKTSIGTLTVEPIGQIILRPNSQIGYNSLVNLDAQSL VFDTSNLFEWNKFSGYDRFENGIRANYGGQAMLTFDNGGYASLIAGQSYQVAGQNAYATPDAANVGLNSGLDTRLSDYVG SFTIAPSSAFALTAQGRFNVDTFAPRRIDVIGTYNLGAWTGSVQYANYTQQPEIGYDVRRQGLSVSSRYQINDNYFVQGN ITFDMTRHFYPPDIIGNTHPALFYPASYGISGGYQDDCTTFSLMYNSFDQDTGSGTLYRNQTFLVSFQLRTLGEFKFSKA FTNYNTLDGVKY
Sequences:
>Translated_892_residues MGRRFCPVNPGLSRTKTRHGSRVRGFWCSAVLSPSILVVVLSGIGMSALFDAAALAAPANADARAQKATVPAAGSPAGQV SPANEASPPKKERMLVEAAEMRYDAEKDTVAAVGNAQVYLDGRVLEADRVTYERKTGRVYAEGHAKMTERDGSVMYGERF DLSDDFRDGFVESLRYESADKTYFSAPHMERIAEDTAVFDKGTYTACKPCQDNPDRPRFWQVRAKRIVHKNDEHMIYYED ASLELLGIPLASMPFFSSPDPTVTRKSGILSPHYLNKSRLGYGVGVPIFWALAPNYDITVTPTAYSEQGFFGSAEWRHRL ENGYYYIRGNGIVESNPYAFPASPWGSGSHRSRGDLESKGQFALSDYWKFGWEFTLLSDKWFLWDYQVSTQTLSSNYIAE STSTVYLTGQADRGFFDLRGYHFTGLSSHDFQPQQPWVRPVWDYNKTFDIDPEKTHGIGGQAEVNFNLTSLSAASASYQA VGPRQLDSAYNLYDICNNYQPGRTNGDCLLRGIGGDYTRATLETSWKRKIVDPLGEVWTPFAFARFNGQWLNLNTTNSYT FSNGVTSSTYTNASQLAFLGNRASAFYGQFTPGAGLEYRYPLFAKTSIGTLTVEPIGQIILRPNSQIGYNSLVNLDAQSL VFDTSNLFEWNKFSGYDRFENGIRANYGGQAMLTFDNGGYASLIAGQSYQVAGQNAYATPDAANVGLNSGLDTRLSDYVG SFTIAPSSAFALTAQGRFNVDTFAPRRIDVIGTYNLGAWTGSVQYANYTQQPEIGYDVRRQGLSVSSRYQINDNYFVQGN ITFDMTRHFYPPDIIGNTHPALFYPASYGISGGYQDDCTTFSLMYNSFDQDTGSGTLYRNQTFLVSFQLRTLGEFKFSKA FTNYNTLDGVKY >Mature_891_residues GRRFCPVNPGLSRTKTRHGSRVRGFWCSAVLSPSILVVVLSGIGMSALFDAAALAAPANADARAQKATVPAAGSPAGQVS PANEASPPKKERMLVEAAEMRYDAEKDTVAAVGNAQVYLDGRVLEADRVTYERKTGRVYAEGHAKMTERDGSVMYGERFD LSDDFRDGFVESLRYESADKTYFSAPHMERIAEDTAVFDKGTYTACKPCQDNPDRPRFWQVRAKRIVHKNDEHMIYYEDA SLELLGIPLASMPFFSSPDPTVTRKSGILSPHYLNKSRLGYGVGVPIFWALAPNYDITVTPTAYSEQGFFGSAEWRHRLE NGYYYIRGNGIVESNPYAFPASPWGSGSHRSRGDLESKGQFALSDYWKFGWEFTLLSDKWFLWDYQVSTQTLSSNYIAES TSTVYLTGQADRGFFDLRGYHFTGLSSHDFQPQQPWVRPVWDYNKTFDIDPEKTHGIGGQAEVNFNLTSLSAASASYQAV GPRQLDSAYNLYDICNNYQPGRTNGDCLLRGIGGDYTRATLETSWKRKIVDPLGEVWTPFAFARFNGQWLNLNTTNSYTF SNGVTSSTYTNASQLAFLGNRASAFYGQFTPGAGLEYRYPLFAKTSIGTLTVEPIGQIILRPNSQIGYNSLVNLDAQSLV FDTSNLFEWNKFSGYDRFENGIRANYGGQAMLTFDNGGYASLIAGQSYQVAGQNAYATPDAANVGLNSGLDTRLSDYVGS FTIAPSSAFALTAQGRFNVDTFAPRRIDVIGTYNLGAWTGSVQYANYTQQPEIGYDVRRQGLSVSSRYQINDNYFVQGNI TFDMTRHFYPPDIIGNTHPALFYPASYGISGGYQDDCTTFSLMYNSFDQDTGSGTLYRNQTFLVSFQLRTLGEFKFSKAF TNYNTLDGVKY
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
None
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 99214; Mature: 99083
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRRFCPVNPGLSRTKTRHGSRVRGFWCSAVLSPSILVVVLSGIGMSALFDAAALAAPAN CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHCCCCC ADARAQKATVPAAGSPAGQVSPANEASPPKKERMLVEAAEMRYDAEKDTVAAVGNAQVYL CCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEE DGRVLEADRVTYERKTGRVYAEGHAKMTERDGSVMYGERFDLSDDFRDGFVESLRYESAD CCEEEECCCCEEEECCCEEEECCCCEEECCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC KTYFSAPHMERIAEDTAVFDKGTYTACKPCQDNPDRPRFWQVRAKRIVHKNDEHMIYYED CEEECCCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC ASLELLGIPLASMPFFSSPDPTVTRKSGILSPHYLNKSRLGYGVGVPIFWALAPNYDITV CCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE TPTAYSEQGFFGSAEWRHRLENGYYYIRGNGIVESNPYAFPASPWGSGSHRSRGDLESKG CCCCCCCCCCCCCHHHHHHHHCCEEEEECCEEECCCCEECCCCCCCCCCCCCCCCCCCCC QFALSDYWKFGWEFTLLSDKWFLWDYQVSTQTLSSNYIAESTSTVYLTGQADRGFFDLRG CEEEEHHHHCCEEEEEECCEEEEEEEEEEEEECCCCEEECCCCEEEEEECCCCCEEEECC YHFTGLSSHDFQPQQPWVRPVWDYNKTFDIDPEKTHGIGGQAEVNFNLTSLSAASASYQA EEEECCCCCCCCCCCCCCCEECCCCCEECCCCCHHCCCCCEEEEEEEEEEECCCCCCCCC VGPRQLDSAYNLYDICNNYQPGRTNGDCLLRGIGGDYTRATLETSWKRKIVDPLGEVWTP CCCHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCC FAFARFNGQWLNLNTTNSYTFSNGVTSSTYTNASQLAFLGNRASAFYGQFTPGAGLEYRY EEEEEECCEEEEEECCCCEEECCCCCCCCCCCCHHEEEECCCCCEEEECCCCCCCCEEEC PLFAKTSIGTLTVEPIGQIILRPNSQIGYNSLVNLDAQSLVFDTSNLFEWNKFSGYDRFE CEEEECCCCEEEECCCCEEEECCCCCCCCCCEECCCCHHEEEECCCCCCCCCCCCCHHHH NGIRANYGGQAMLTFDNGGYASLIAGQSYQVAGQNAYATPDAANVGLNSGLDTRLSDYVG CCCEECCCCEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCC SFTIAPSSAFALTAQGRFNVDTFAPRRIDVIGTYNLGAWTGSVQYANYTQQPEIGYDVRR CEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEECCEEECCCCCCCCCCHHHHH QGLSVSSRYQINDNYFVQGNITFDMTRHFYPPDIIGNTHPALFYPASYGISGGYQDDCTT CCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE FSLMYNSFDQDTGSGTLYRNQTFLVSFQLRTLGEFKFSKAFTNYNTLDGVKY EEEECCCCCCCCCCCEEEECCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC >Mature Secondary Structure GRRFCPVNPGLSRTKTRHGSRVRGFWCSAVLSPSILVVVLSGIGMSALFDAAALAAPAN CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHCCCCC ADARAQKATVPAAGSPAGQVSPANEASPPKKERMLVEAAEMRYDAEKDTVAAVGNAQVYL CCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCEEEEE DGRVLEADRVTYERKTGRVYAEGHAKMTERDGSVMYGERFDLSDDFRDGFVESLRYESAD CCEEEECCCCEEEECCCEEEECCCCEEECCCCCEEECCCCCCCCHHHHHHHHHHHCCCCC KTYFSAPHMERIAEDTAVFDKGTYTACKPCQDNPDRPRFWQVRAKRIVHKNDEHMIYYED CEEECCCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC ASLELLGIPLASMPFFSSPDPTVTRKSGILSPHYLNKSRLGYGVGVPIFWALAPNYDITV CCEEEEECCHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE TPTAYSEQGFFGSAEWRHRLENGYYYIRGNGIVESNPYAFPASPWGSGSHRSRGDLESKG CCCCCCCCCCCCCHHHHHHHHCCEEEEECCEEECCCCEECCCCCCCCCCCCCCCCCCCCC QFALSDYWKFGWEFTLLSDKWFLWDYQVSTQTLSSNYIAESTSTVYLTGQADRGFFDLRG CEEEEHHHHCCEEEEEECCEEEEEEEEEEEEECCCCEEECCCCEEEEEECCCCCEEEECC YHFTGLSSHDFQPQQPWVRPVWDYNKTFDIDPEKTHGIGGQAEVNFNLTSLSAASASYQA EEEECCCCCCCCCCCCCCCEECCCCCEECCCCCHHCCCCCEEEEEEEEEEECCCCCCCCC VGPRQLDSAYNLYDICNNYQPGRTNGDCLLRGIGGDYTRATLETSWKRKIVDPLGEVWTP CCCHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHCC FAFARFNGQWLNLNTTNSYTFSNGVTSSTYTNASQLAFLGNRASAFYGQFTPGAGLEYRY EEEEEECCEEEEEECCCCEEECCCCCCCCCCCCHHEEEECCCCCEEEECCCCCCCCEEEC PLFAKTSIGTLTVEPIGQIILRPNSQIGYNSLVNLDAQSLVFDTSNLFEWNKFSGYDRFE CEEEECCCCEEEECCCCEEEECCCCCCCCCCEECCCCHHEEEECCCCCCCCCCCCCHHHH NGIRANYGGQAMLTFDNGGYASLIAGQSYQVAGQNAYATPDAANVGLNSGLDTRLSDYVG CCCEECCCCEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHCC SFTIAPSSAFALTAQGRFNVDTFAPRRIDVIGTYNLGAWTGSVQYANYTQQPEIGYDVRR CEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEECCEEECCCCCCCCCCHHHHH QGLSVSSRYQINDNYFVQGNITFDMTRHFYPPDIIGNTHPALFYPASYGISGGYQDDCTT CCCCCCCEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEE FSLMYNSFDQDTGSGTLYRNQTFLVSFQLRTLGEFKFSKAFTNYNTLDGVKY EEEECCCCCCCCCCCEEEECCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12910271 [H]