BacMap

Definition	Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome.
Accession	NC_010581
Length	4,170,153

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The map label for this gene is vdlC [H]

Identifier: 182677042

GI number: 182677042

Start: 41211

End: 42062

Strand: Direct

Name: vdlC [H]

Synonym: Bind_0040

Alternate gene names: 182677042

Gene position: 41211-42062 (Clockwise)

Preceding gene: 182677041

Following gene: 182677043

Centisome position: 0.99

GC content: 62.56

Gene sequence:

>852_bases
ATGACCACAAAAGTCGCACTCGTTACCGGCGCCTCATCGGGCATCGGCGAGTCCACCGCCCTCAAACTTAAGGAGCTTGG
CTGCACGGTCTATGGCGCGGCCCGCCGCGTTGACCGGATGCAACACCTGACCAAGTCCGATATCCGGATTTTGGCGATGG
ACGTCACCGATGACGCCTCGATGCAGGCTGGCATCGACAAGATCATCGCCGAGGAGGGCCGGATCGATGTGCTCGTCAAC
AATGCCGGATACGGCTCCTACGGCGCAGTCGAGGACGTGCCGATAGAGGAGGCGCGCGCCCAGTTCGAGGTCAACGTCTT
CGGCGCCGTCCGGCTAATCCAGCTTGCCCTGCCGCATATGCGGGCGCAGCGTTCGGGCACGATCGTCAACATCACCTCGA
TGGGCGGCAAGATCCACACCCCGCTCGGCGCCTGGTATCACGGCACCAAATTCGCGCTGGAGGCGATCAGCGATTGCCTG
CGCATGGAAGTGCAGCCCTTCGGGATCGACGTCGTCGTAATCGAACCGGGTGGCATCAAGACGGAGTGGGCCGGTATAGC
CGCTGACAAGTTGCGCCAGACTTCGGGTCACGGCCTCTATGCCGCGCAGGCCAATGCCATGGCGCAATCCATGATCGGCG
ACGCCAGCGTCAAGCGCCAGTCACCGCCGCAGATCATTGCGGACACGATCGCCAAGGCCGTGACTGCGTCCAAGCCAAAG
ACCCGTTATGCGATCGGTTTCGGGGCAAAGCCGATGATCTTCATGCGCGGCATCCTGTCCGACCGCGCCTTCGACGGCAT
GATGCGGACGGCGACCGGCATCTCCAAAGCCTTGAAGGGCCAGAAGGTTTAG

Upstream 100 bases:

>100_bases
CAATGTGATGGCGTGTTGGCTTAGCTACTTATCGTCCAGAAGACATTGCCGCCGTGCCAGGGCAGCAAAAGCAATCGGTT
CGAACAAAAGGAACTACGCC

Downstream 100 bases:

>100_bases
TCGGAGTCTCTGCGATGCGCGATATCCTGAAGAACTACATTGATGGCGCCTGGGTCGCTTCAGCTGGAGTTGATACGCGG
GACATCATCAATCCCGCCAC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MTTKVALVTGASSGIGESTALKLKELGCTVYGAARRVDRMQHLTKSDIRILAMDVTDDASMQAGIDKIIAEEGRIDVLVN
NAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHMRAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCL
RMEVQPFGIDVVVIEPGGIKTEWAGIAADKLRQTSGHGLYAAQANAMAQSMIGDASVKRQSPPQIIADTIAKAVTASKPK
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKALKGQKV

Sequences:

>Translated_283_residues
MTTKVALVTGASSGIGESTALKLKELGCTVYGAARRVDRMQHLTKSDIRILAMDVTDDASMQAGIDKIIAEEGRIDVLVN
NAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHMRAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCL
RMEVQPFGIDVVVIEPGGIKTEWAGIAADKLRQTSGHGLYAAQANAMAQSMIGDASVKRQSPPQIIADTIAKAVTASKPK
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKALKGQKV
>Mature_282_residues
TTKVALVTGASSGIGESTALKLKELGCTVYGAARRVDRMQHLTKSDIRILAMDVTDDASMQAGIDKIIAEEGRIDVLVNN
AGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHMRAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCLR
MEVQPFGIDVVVIEPGGIKTEWAGIAADKLRQTSGHGLYAAQANAMAQSMIGDASVKRQSPPQIIADTIAKAVTASKPKT
RYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKALKGQKV

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=193, Percent_Identity=36.7875647668394, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI223718074, Length=273, Percent_Identity=30.4029304029304, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI44680136, Length=268, Percent_Identity=29.8507462686567, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI44680133, Length=268, Percent_Identity=29.8507462686567, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI17738292, Length=268, Percent_Identity=29.8507462686567, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=33.6633663366337, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI7657478, Length=273, Percent_Identity=27.4725274725275, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI19743808, Length=282, Percent_Identity=26.9503546099291, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI119392083, Length=281, Percent_Identity=28.1138790035587, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI150247226, Length=285, Percent_Identity=27.3684210526316, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI40548397, Length=286, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI214010158, Length=286, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI214010156, Length=286, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI22758144, Length=286, Percent_Identity=26.9230769230769, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI4504503, Length=297, Percent_Identity=26.2626262626263, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI22507405, Length=273, Percent_Identity=26.007326007326, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI50726952, Length=265, Percent_Identity=29.4339622641509, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI157739938, Length=251, Percent_Identity=23.5059760956175, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=27.6923076923077, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI59889578, Length=173, Percent_Identity=31.7919075144509, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI7705855, Length=200, Percent_Identity=30, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI109715829, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI32455239, Length=191, Percent_Identity=30.3664921465969, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI5031765, Length=191, Percent_Identity=30.3664921465969, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786701, Length=267, Percent_Identity=31.8352059925094, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787335, Length=192, Percent_Identity=34.8958333333333, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1786812, Length=181, Percent_Identity=34.2541436464088, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082100, Length=190, Percent_Identity=32.6315789473684, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787820, Length=177, Percent_Identity=30.5084745762712, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788459, Length=193, Percent_Identity=32.6424870466321, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787905, Length=141, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=30.8900523560209, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789208, Length=187, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87082160, Length=184, Percent_Identity=27.7173913043478, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790717, Length=185, Percent_Identity=28.6486486486486, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17557780, Length=299, Percent_Identity=29.7658862876254, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=202, Percent_Identity=32.1782178217822, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=33.5106382978723, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI115534660, Length=264, Percent_Identity=26.1363636363636, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71997402, Length=264, Percent_Identity=29.5454545454545, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17570069, Length=265, Percent_Identity=28.6792452830189, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17538486, Length=208, Percent_Identity=30.2884615384615, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17560332, Length=204, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=196, Percent_Identity=32.1428571428571, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=276, Percent_Identity=23.9130434782609, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17507613, Length=276, Percent_Identity=23.9130434782609, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=32.1428571428571, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=26.9961977186312, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=213, Percent_Identity=31.4553990610329, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=28.3524904214559, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=207, Percent_Identity=29.4685990338164, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=211, Percent_Identity=29.3838862559242, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=198, Percent_Identity=28.7878787878788, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=199, Percent_Identity=26.6331658291457, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=198, Percent_Identity=29.2929292929293, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=217, Percent_Identity=30.4147465437788, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=263, Percent_Identity=24.3346007604563, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=209, Percent_Identity=27.7511961722488, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=194, Percent_Identity=29.3814432989691, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=194, Percent_Identity=25.7731958762887, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=186, Percent_Identity=31.1827956989247, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=255, Percent_Identity=30.5882352941176, Blast_Score=107, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6322067, Length=190, Percent_Identity=31.0526315789474, Blast_Score=87, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6322227, Length=251, Percent_Identity=27.0916334661355, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322226, Length=185, Percent_Identity=28.1081081081081, Blast_Score=62, Evalue=8e-11,
Organism=Drosophila melanogaster, GI21358495, Length=246, Percent_Identity=30.4878048780488, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI116007236, Length=199, Percent_Identity=35.1758793969849, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=32.0855614973262, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=35.8695652173913, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=36.8983957219251, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI28571526, Length=186, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=30.9644670050761, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24641232, Length=208, Percent_Identity=35.0961538461538, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24644339, Length=181, Percent_Identity=29.2817679558011, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28571387, Length=245, Percent_Identity=31.0204081632653, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24651139, Length=272, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648944, Length=196, Percent_Identity=31.1224489795918, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24643142, Length=182, Percent_Identity=30.2197802197802, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=30.635838150289, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI116007234, Length=196, Percent_Identity=34.6938775510204, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24640442, Length=198, Percent_Identity=29.7979797979798, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI116007232, Length=179, Percent_Identity=34.0782122905028, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355631, Length=176, Percent_Identity=26.7045454545455, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24663911, Length=199, Percent_Identity=30.6532663316583, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19922066, Length=290, Percent_Identity=23.1034482758621, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24584752, Length=238, Percent_Identity=26.890756302521, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24639444, Length=197, Percent_Identity=29.9492385786802, Blast_Score=68, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30166; Mature: 30035

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKVALVTGASSGIGESTALKLKELGCTVYGAARRVDRMQHLTKSDIRILAMDVTDDAS
CCCEEEEEECCCCCCCCHHHHHHHHHCCEEHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
MQAGIDKIIAEEGRIDVLVNNAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHM
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEHHHHHHHHHHHHHHH
RAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCLRMEVQPFGIDVVVIEPGGIK
HHHCCCCEEEEEECCCEEECCCCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
TEWAGIAADKLRQTSGHGLYAAQANAMAQSMIGDASVKRQSPPQIIADTIAKAVTASKPK
CHHCCCCHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKALKGQKV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTKVALVTGASSGIGESTALKLKELGCTVYGAARRVDRMQHLTKSDIRILAMDVTDDAS
CCEEEEEECCCCCCCCHHHHHHHHHCCEEHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
MQAGIDKIIAEEGRIDVLVNNAGYGSYGAVEDVPIEEARAQFEVNVFGAVRLIQLALPHM
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHEEEEEHHHHHHHHHHHHHHH
RAQRSGTIVNITSMGGKIHTPLGAWYHGTKFALEAISDCLRMEVQPFGIDVVVIEPGGIK
HHHCCCCEEEEEECCCEEECCCCCHHCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
TEWAGIAADKLRQTSGHGLYAAQANAMAQSMIGDASVKRQSPPQIIADTIAKAVTASKPK
CHHCCCCHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
TRYAIGFGAKPMIFMRGILSDRAFDGMMRTATGISKALKGQKV
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]