| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is plcH [H]
Identifier: 182677016
GI number: 182677016
Start: 14538
End: 16481
Strand: Direct
Name: plcH [H]
Synonym: Bind_0014
Alternate gene names: 182677016
Gene position: 14538-16481 (Clockwise)
Preceding gene: 182677015
Following gene: 182677017
Centisome position: 0.35
GC content: 56.58
Gene sequence:
>1944_bases ATGTCTTTCATGACACGCATACTTGCAGCAAGCAAACGCATCACCGCCAGCACGACCGCCTTGGCGATTGCGTTGATGTC GGCCGGCTTTTCATCTCCGAGCTTGAGCGCCGAGGGGCCTACGCCTTCCGGCACGGTGACACCGATCAAGCACGTTATCA TCATCGTCGGCGAAAACCGGTCTTTTGACCATGTTTTCGGCGCCTACCAGCCGCCAAAAGGCGAGACGGTCTATAACCTG CTTTCGCAGGGCATTATCAAGGCCGATGGAACGCCAGGCCCCAATTTCGCTCTCGCCAAGCAATATCAGGGTAGCCTGCA GGCGCCCGCGAAATATTCCCTGGTTCCGACGTCCAAGACCCCTTATCAGGTCCTGCCGGCGCCCAATACGGGGGGAACGC ATACGGCGCCCAGCGATGCCAACCCGCCGCCCTTCGCCTCCCTGGCGCTCGCAACCCAAGCCGAATCCGCTGCGCTGCTT CCGGAAGATCTCCAGCTTCTGACCACGGGCGCGAGCGGCTTGCCGAAAGGCGTCGTCGATACACGCATTGCCAATGCGAC TAATTTGCCGAGCGGGCCGTTCCAACTGACCCCGAGCCTGCCCTATGACGCTTACGCCGCGGGCGCGGTGCATCGTTTCT ATCAGAATTGGCAGCAGCTCGATTGCAGCATTGCCCATGCGACGAAAAAGAATCCGAGCGGCTGTCTCGGCGATCTCTTC GCCTGGGTGGAAGTCACGATTGGCGCCGGCAGCAATGGCAAATCGCAGCCGACTGGTTTCAATGACGAGACGACCCATGA AGGCGCTAGCGCCTTGGGATTCTACAATACGAATAATGGCGATATGCCCTATTTCACCGCGCTCGCGCAGACCTATGCGC TCAGCGACAATTATCACCAGCCGGTCTCGGGTGGTACCGGTGCCAATAGCATCATGCTCGGCACCGCCGATGCCATCTAT TATACGGATGGCCAAGGCCATGTCGCGACGCCGCCTGCCAATCAGATCGAAAATCCAGATCCCGCGCCAAGCACCAATAA TTGGTACACGCAGGATGGCTACAGCGGCGGCTCCTACAGCAATTGTTCCGACCCGACTCAGCCAGGTGTCGGCGCCATCA TCAGCTATCTCCGGTCGTTGCCCCATAAGCCAAGGGCGAATTGCGCGCCGGGCGCCTATTATCTGCTGAATAATTATGAT CCCGGTTATAATGGTGACGGCTCTCTCCATACGAGCAATCCCTTCACCATTCCGCCGTCGCCGGTGCATACCATCGCCAA CAGGCTTAACGAGAAAGATATCTCGTGGAAATATTATGGCGAGGGTTGGAATTCATTCGTCGCCAATAGCCCCTTGAGTG TTTATTGCAACATCTGCAATCCGTTCCTTTATCAAACCGCGGTCATGACCAACCCGTCTGCTCGCGCAAAGAATCTGAAG GACACGACGGATCTTTATAGCGATATTGCGAGCGGCGAACTGCCGGCCGTTTCCTATGTCAAACCCGGTGGGCTGCTCGA TGGTCACCCCACTTCGTCCAAGTTCGATCTGTTCGAGGCCTTCACCAAGAAGATCATTCTTGCGGTTCAAAACAATCCGA AGCTGTGGGCGGATACGGCCATCTTCGTCACGGTCGATGAAGGCGGCGGTTACTATGATTCAGGCTATGTCCAGCCGCTC GATTTCTTCGGCGATGGTCCCCGCATTCCCTTGATCGTGGTTTCGCCCTATTCCACCGGCGGTCATGTGGTGCATACCTA TTATGACCATGCCTCGCTGCTGAAATTCATCGAACGCAATTGGAGCCTTCAGCCGATCACCCATCGCAGCCGCGATAATC TGCCCAATCCGGTGGCTGAAGACGAAAACCCCTATGTTCCGGTCAATAGCCCGGCGATCGGCGATCTGTTCGAAATGTTC GATTTCGGTAAAAAGGGTCACTAA
Upstream 100 bases:
>100_bases CAGATTATTTCAAATCCAAAGGTATTTGCTAAGCTAACCTACGCATTTCTGTAATAGTGCCTGACTATGGTCCGCCCGTC CAAACTGAGTGACGGGGGAC
Downstream 100 bases:
>100_bases CATGAAAAGCCATCACGCGTGATTGCGACGCGTGAGTTTGAGGCGTCAAACTGATACCAGCTCTTGATGAGCATGACTCA TCAAGAGCTGCCCCCGCGAC
Product: phosphoesterase
Products: NA
Alternate protein names: Heat-labile hemolysin; PLC-H; Phosphatidylcholine cholinephosphohydrolase [H]
Number of amino acids: Translated: 647; Mature: 646
Protein sequence:
>647_residues MSFMTRILAASKRITASTTALAIALMSAGFSSPSLSAEGPTPSGTVTPIKHVIIIVGENRSFDHVFGAYQPPKGETVYNL LSQGIIKADGTPGPNFALAKQYQGSLQAPAKYSLVPTSKTPYQVLPAPNTGGTHTAPSDANPPPFASLALATQAESAALL PEDLQLLTTGASGLPKGVVDTRIANATNLPSGPFQLTPSLPYDAYAAGAVHRFYQNWQQLDCSIAHATKKNPSGCLGDLF AWVEVTIGAGSNGKSQPTGFNDETTHEGASALGFYNTNNGDMPYFTALAQTYALSDNYHQPVSGGTGANSIMLGTADAIY YTDGQGHVATPPANQIENPDPAPSTNNWYTQDGYSGGSYSNCSDPTQPGVGAIISYLRSLPHKPRANCAPGAYYLLNNYD PGYNGDGSLHTSNPFTIPPSPVHTIANRLNEKDISWKYYGEGWNSFVANSPLSVYCNICNPFLYQTAVMTNPSARAKNLK DTTDLYSDIASGELPAVSYVKPGGLLDGHPTSSKFDLFEAFTKKIILAVQNNPKLWADTAIFVTVDEGGGYYDSGYVQPL DFFGDGPRIPLIVVSPYSTGGHVVHTYYDHASLLKFIERNWSLQPITHRSRDNLPNPVAEDENPYVPVNSPAIGDLFEMF DFGKKGH
Sequences:
>Translated_647_residues MSFMTRILAASKRITASTTALAIALMSAGFSSPSLSAEGPTPSGTVTPIKHVIIIVGENRSFDHVFGAYQPPKGETVYNL LSQGIIKADGTPGPNFALAKQYQGSLQAPAKYSLVPTSKTPYQVLPAPNTGGTHTAPSDANPPPFASLALATQAESAALL PEDLQLLTTGASGLPKGVVDTRIANATNLPSGPFQLTPSLPYDAYAAGAVHRFYQNWQQLDCSIAHATKKNPSGCLGDLF AWVEVTIGAGSNGKSQPTGFNDETTHEGASALGFYNTNNGDMPYFTALAQTYALSDNYHQPVSGGTGANSIMLGTADAIY YTDGQGHVATPPANQIENPDPAPSTNNWYTQDGYSGGSYSNCSDPTQPGVGAIISYLRSLPHKPRANCAPGAYYLLNNYD PGYNGDGSLHTSNPFTIPPSPVHTIANRLNEKDISWKYYGEGWNSFVANSPLSVYCNICNPFLYQTAVMTNPSARAKNLK DTTDLYSDIASGELPAVSYVKPGGLLDGHPTSSKFDLFEAFTKKIILAVQNNPKLWADTAIFVTVDEGGGYYDSGYVQPL DFFGDGPRIPLIVVSPYSTGGHVVHTYYDHASLLKFIERNWSLQPITHRSRDNLPNPVAEDENPYVPVNSPAIGDLFEMF DFGKKGH >Mature_646_residues SFMTRILAASKRITASTTALAIALMSAGFSSPSLSAEGPTPSGTVTPIKHVIIIVGENRSFDHVFGAYQPPKGETVYNLL SQGIIKADGTPGPNFALAKQYQGSLQAPAKYSLVPTSKTPYQVLPAPNTGGTHTAPSDANPPPFASLALATQAESAALLP EDLQLLTTGASGLPKGVVDTRIANATNLPSGPFQLTPSLPYDAYAAGAVHRFYQNWQQLDCSIAHATKKNPSGCLGDLFA WVEVTIGAGSNGKSQPTGFNDETTHEGASALGFYNTNNGDMPYFTALAQTYALSDNYHQPVSGGTGANSIMLGTADAIYY TDGQGHVATPPANQIENPDPAPSTNNWYTQDGYSGGSYSNCSDPTQPGVGAIISYLRSLPHKPRANCAPGAYYLLNNYDP GYNGDGSLHTSNPFTIPPSPVHTIANRLNEKDISWKYYGEGWNSFVANSPLSVYCNICNPFLYQTAVMTNPSARAKNLKD TTDLYSDIASGELPAVSYVKPGGLLDGHPTSSKFDLFEAFTKKIILAVQNNPKLWADTAIFVTVDEGGGYYDSGYVQPLD FFGDGPRIPLIVVSPYSTGGHVVHTYYDHASLLKFIERNWSLQPITHRSRDNLPNPVAEDENPYVPVNSPAIGDLFEMFD FGKKGH
Specific function: Hydrolyzes sphingomyelin in addition to phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 69148; Mature: 69017
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFMTRILAASKRITASTTALAIALMSAGFSSPSLSAEGPTPSGTVTPIKHVIIIVGENR CHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC SFDHVFGAYQPPKGETVYNLLSQGIIKADGTPGPNFALAKQYQGSLQAPAKYSLVPTSKT CCHHHHCCCCCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCC PYQVLPAPNTGGTHTAPSDANPPPFASLALATQAESAALLPEDLQLLTTGASGLPKGVVD CEEEEECCCCCCCCCCCCCCCCCCCHHEEEHHCCCCCCCCHHHHHEEECCCCCCCCCHHH TRIANATNLPSGPFQLTPSLPYDAYAAGAVHRFYQNWQQLDCSIAHATKKNPSGCLGDLF HHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHE AWVEVTIGAGSNGKSQPTGFNDETTHEGASALGFYNTNNGDMPYFTALAQTYALSDNYHQ EEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC PVSGGTGANSIMLGTADAIYYTDGQGHVATPPANQIENPDPAPSTNNWYTQDGYSGGSYS CCCCCCCCCEEEEECCCEEEEECCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC NCSDPTQPGVGAIISYLRSLPHKPRANCAPGAYYLLNNYDPGYNGDGSLHTSNPFTIPPS CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCC PVHTIANRLNEKDISWKYYGEGWNSFVANSPLSVYCNICNPFLYQTAVMTNPSARAKNLK HHHHHHHHCCCCCCCEEEECCCHHHHHCCCCCEEEEEHHCHHHHHHHHCCCCCHHHCCCC DTTDLYSDIASGELPAVSYVKPGGLLDGHPTSSKFDLFEAFTKKIILAVQNNPKLWADTA HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCEEECEE IFVTVDEGGGYYDSGYVQPLDFFGDGPRIPLIVVSPYSTGGHVVHTYYDHASLLKFIERN EEEEECCCCCEECCCCCCCHHHCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHC WSLQPITHRSRDNLPNPVAEDENPYVPVNSPAIGDLFEMFDFGKKGH CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCC >Mature Secondary Structure SFMTRILAASKRITASTTALAIALMSAGFSSPSLSAEGPTPSGTVTPIKHVIIIVGENR HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCC SFDHVFGAYQPPKGETVYNLLSQGIIKADGTPGPNFALAKQYQGSLQAPAKYSLVPTSKT CCHHHHCCCCCCCCHHHHHHHHCCEEECCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCC PYQVLPAPNTGGTHTAPSDANPPPFASLALATQAESAALLPEDLQLLTTGASGLPKGVVD CEEEEECCCCCCCCCCCCCCCCCCCHHEEEHHCCCCCCCCHHHHHEEECCCCCCCCCHHH TRIANATNLPSGPFQLTPSLPYDAYAAGAVHRFYQNWQQLDCSIAHATKKNPSGCLGDLF HHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCHHHHHE AWVEVTIGAGSNGKSQPTGFNDETTHEGASALGFYNTNNGDMPYFTALAQTYALSDNYHQ EEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCC PVSGGTGANSIMLGTADAIYYTDGQGHVATPPANQIENPDPAPSTNNWYTQDGYSGGSYS CCCCCCCCCEEEEECCCEEEEECCCCEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC NCSDPTQPGVGAIISYLRSLPHKPRANCAPGAYYLLNNYDPGYNGDGSLHTSNPFTIPPS CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCC PVHTIANRLNEKDISWKYYGEGWNSFVANSPLSVYCNICNPFLYQTAVMTNPSARAKNLK HHHHHHHHCCCCCCCEEEECCCHHHHHCCCCCEEEEEHHCHHHHHHHHCCCCCHHHCCCC DTTDLYSDIASGELPAVSYVKPGGLLDGHPTSSKFDLFEAFTKKIILAVQNNPKLWADTA HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCEEEEEECCCCCEEECEE IFVTVDEGGGYYDSGYVQPLDFFGDGPRIPLIVVSPYSTGGHVVHTYYDHASLLKFIERN EEEEECCCCCEECCCCCCCHHHCCCCCCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHC WSLQPITHRSRDNLPNPVAEDENPYVPVNSPAIGDLFEMFDFGKKGH CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3087958; 10984043 [H]