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The map label for this gene is ybiX [C]

Identifier: 182682159

GI number: 182682159

Start: 1818416

End: 1819108

Strand: Direct

Name: ybiX [C]

Synonym: XfasM23_1638

Alternate gene names: 182682159

Gene position: 1818416-1819108 (Clockwise)

Preceding gene: 182682158

Following gene: 182682160

Centisome position: 71.71

GC content: 55.12

Gene sequence:

>693_bases
ATGCTTTTACACATCCCAACCATCCTCAGTCGCACACATGCCACCTCAATGCAGGAACGCTTAGCAGCAGCCAATTGGAC
CGACGGACGCGAGACCGTCGGTCCCCAAGGGGCTCAGGTTAAACATAATCTACAGCTACCGGAAACATCACCATTGCGCC
AAGAACTCGGGCAAGAGATCCTTGATGCACTGGCACGCAGCCCACTGTACTTTGCTGCAACATTACCGCTACGCACACTG
CCACCACGTTTCAACCGCTACCAAGAAAACCACCAATACGGATTTCACGTTGACGGCGCAGTGATGTCCCTTCCGGTCGC
CCCCGACCATACTCCAGCCAGCCTACGCAGCGACATCTCCTGCACCTTATTTCTCAACGACCCGGACGAATACGAGGGCG
GTGAACTGATCATCGCTGATACCTACGGCGAGCATGAAGTCAAATTACCAGCCGGCGACCTTATCATTTACCCATCCACC
AGCTTACACCGGGTCGCACCGGTCACCCGCGGCATGCGCATCGCCTCTTTTTTTTGGGTGCAAAGCCTGGTGCGTCAAGC
CACACACCGCCATCAATTACTTGAGCTGGACACAGCGATACAATCACTGACTGCCTCCAACACCGACCACAACACGATCC
TGCGACTCACCAACGTCTATCACAACCTGCTGCGGGAATGGTCGGAAACCTGA

Upstream 100 bases:

>100_bases
GGTATGCACCAGGGATCCCACGTGCGTTTCTACTGACAGCAAACTTCCACTTCTAAGCGACACGAGCACGGCATGAACAC
CTAGCTCAAAAAAACTCACA

Downstream 100 bases:

>100_bases
ACACATCTAATGCCAACCACACCCTCCTCCACCACCGCCGACGCAACCAAGCGTCGACAACGCCGCAACCTCTGGCTGCG
CACATTGCACCAATGGCACT

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MLLHIPTILSRTHATSMQERLAAANWTDGRETVGPQGAQVKHNLQLPETSPLRQELGQEILDALARSPLYFAATLPLRTL
PPRFNRYQENHQYGFHVDGAVMSLPVAPDHTPASLRSDISCTLFLNDPDEYEGGELIIADTYGEHEVKLPAGDLIIYPST
SLHRVAPVTRGMRIASFFWVQSLVRQATHRHQLLELDTAIQSLTASNTDHNTILRLTNVYHNLLREWSET

Sequences:

>Translated_230_residues
MLLHIPTILSRTHATSMQERLAAANWTDGRETVGPQGAQVKHNLQLPETSPLRQELGQEILDALARSPLYFAATLPLRTL
PPRFNRYQENHQYGFHVDGAVMSLPVAPDHTPASLRSDISCTLFLNDPDEYEGGELIIADTYGEHEVKLPAGDLIIYPST
SLHRVAPVTRGMRIASFFWVQSLVRQATHRHQLLELDTAIQSLTASNTDHNTILRLTNVYHNLLREWSET
>Mature_230_residues
MLLHIPTILSRTHATSMQERLAAANWTDGRETVGPQGAQVKHNLQLPETSPLRQELGQEILDALARSPLYFAATLPLRTL
PPRFNRYQENHQYGFHVDGAVMSLPVAPDHTPASLRSDISCTLFLNDPDEYEGGELIIADTYGEHEVKLPAGDLIIYPST
SLHRVAPVTRGMRIASFFWVQSLVRQATHRHQLLELDTAIQSLTASNTDHNTILRLTNVYHNLLREWSET

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=229, Percent_Identity=53.2751091703057, Blast_Score=249, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1553_XYLFT (Q87BA5)

Other databases:

- EMBL:   AE009442
- RefSeq:   NP_779746.1
- ProteinModelPortal:   Q87BA5
- SMR:   Q87BA5
- STRING:   Q87BA5
- GeneID:   1142895
- GenomeReviews:   AE009442_GR
- KEGG:   xft:PD1553
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   NLIRYWA
- ProtClustDB:   PRK05467
- BioCyc:   XFAS183190:PD_1553-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25876; Mature: 25876

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 173-173

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLHIPTILSRTHATSMQERLAAANWTDGRETVGPQGAQVKHNLQLPETSPLRQELGQEI
CEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH
LDALARSPLYFAATLPLRTLPPRFNRYQENHQYGFHVDGAVMSLPVAPDHTPASLRSDIS
HHHHHCCCEEEEEECCCCCCCCHHHHHHHCCCCCEEECCCEEEECCCCCCCCHHHHCCCE
CTLFLNDPDEYEGGELIIADTYGEHEVKLPAGDLIIYPSTSLHRVAPVTRGMRIASFFWV
EEEEECCCCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCHHHHHHHCCHHHHHHHHH
QSLVRQATHRHQLLELDTAIQSLTASNTDHNTILRLTNVYHNLLREWSET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLLHIPTILSRTHATSMQERLAAANWTDGRETVGPQGAQVKHNLQLPETSPLRQELGQEI
CEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHH
LDALARSPLYFAATLPLRTLPPRFNRYQENHQYGFHVDGAVMSLPVAPDHTPASLRSDIS
HHHHHCCCEEEEEECCCCCCCCHHHHHHHCCCCCEEECCCEEEECCCCCCCCHHHHCCCE
CTLFLNDPDEYEGGELIIADTYGEHEVKLPAGDLIIYPSTSLHRVAPVTRGMRIASFFWV
EEEEECCCCCCCCCEEEEEECCCCEEEECCCCCEEEECCCCCHHHHHHHCCHHHHHHHHH
QSLVRQATHRHQLLELDTAIQSLTASNTDHNTILRLTNVYHNLLREWSET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12533478