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The map label for this gene is ydcM [C]

Identifier: 182681805

GI number: 182681805

Start: 1396328

End: 1397206

Strand: Reverse

Name: ydcM [C]

Synonym: XfasM23_1266

Alternate gene names: 182681805

Gene position: 1397206-1396328 (Counterclockwise)

Preceding gene: 182681807

Following gene: 182681804

Centisome position: 55.1

GC content: 55.86

Gene sequence:

>879_bases
GTGCATGACCGATTCACGCTGACCAATGACCAGTTTGACCTTGACGCTTCACGCATTCGCATTCCTCGCCTAGGCTGGGT
GCGCATGCGTGAGACGTTGCGCTTTGCCGGCAGAATCATGTCAGCCACCGTGTCGCGTGTGGCTGCACGTTGGTTTGTTA
GCATCACCGTGGACCTGCCCGATCCATCACATCTACCTCAAGCTGAAAAGCAAGGCGCGGTGGGTGTTGATCTGGGTGTG
TTGGCGCTGGCAACGCTCTCAACCGGAGAAACAATCTGTGGCCCCAGGCCCCACAGGGCGCTGCTGGGTCGCGTGCGCAG
GCTTTCACGCAGTGTGTCGCGTAAAGTCAAAGGTTCTACCAATCGTCACAAAGCCAAAGCCACATTGGCGCATCTACATG
CACGTATTGCAGCAATTCGCTTAGATGCACTGCACAAACTCACCAGCGATCTTACCCGGCGCTTTCACACCATTGGCATT
GAGAACCTGACTGTCAAAGGCATGAAAGGCATGGTTAAGAATCGCCATTTGGCACGTTCCATCGCCGACATGGGCTTTTT
TGAATTCAGGCGGCAGCTTGAATATAAGGCGGCGATGTGTTGTGCGCAGGTTGTGGTGGCTGATCGTTTCTTTGCCAGTA
GCAAGATGTGCTCGACGTGCGGGCACACGCTCAAGGAATTGCCGCTCTCGGTGCGCCAGTGGGCGTGTTTGGGGTGCGGC
ACACGTCATGATCGCGACGTGAACGCTTCGGTTAATTTGAAGAACATGGCCGTGAGTTCCACGGTATCAGCCTGTGGAGA
GGAAGGCGCTGGCCCTCGTCGCAAGACGGCGGTGCAACCGCCCTCGGTGAAGCAGGAAGTCAGCTTTGAATCTGTTTAA

Upstream 100 bases:

>100_bases
CACCAAGAACGCGCCTCAAATGGCAATCATCCAGTTGGGGTAGGCATTTCAGAACTTCTTCGCAGGTCGTGCCAAGTATC
CGAAGTCCCGTAAAAAGGGC

Downstream 100 bases:

>100_bases
ACAGATTTGAGTAGGTATGACAGAACGGGTCCGTAACGGCGCCTTTGCCCCTGGCCTCTGGAACGGGCAGGCCTTCGGTG
CGCTGGCCACCGGCGATTAC

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MHDRFTLTNDQFDLDASRIRIPRLGWVRMRETLRFAGRIMSATVSRVAARWFVSITVDLPDPSHLPQAEKQGAVGVDLGV
LALATLSTGETICGPRPHRALLGRVRRLSRSVSRKVKGSTNRHKAKATLAHLHARIAAIRLDALHKLTSDLTRRFHTIGI
ENLTVKGMKGMVKNRHLARSIADMGFFEFRRQLEYKAAMCCAQVVVADRFFASSKMCSTCGHTLKELPLSVRQWACLGCG
TRHDRDVNASVNLKNMAVSSTVSACGEEGAGPRRKTAVQPPSVKQEVSFESV

Sequences:

>Translated_292_residues
MHDRFTLTNDQFDLDASRIRIPRLGWVRMRETLRFAGRIMSATVSRVAARWFVSITVDLPDPSHLPQAEKQGAVGVDLGV
LALATLSTGETICGPRPHRALLGRVRRLSRSVSRKVKGSTNRHKAKATLAHLHARIAAIRLDALHKLTSDLTRRFHTIGI
ENLTVKGMKGMVKNRHLARSIADMGFFEFRRQLEYKAAMCCAQVVVADRFFASSKMCSTCGHTLKELPLSVRQWACLGCG
TRHDRDVNASVNLKNMAVSSTVSACGEEGAGPRRKTAVQPPSVKQEVSFESV
>Mature_292_residues
MHDRFTLTNDQFDLDASRIRIPRLGWVRMRETLRFAGRIMSATVSRVAARWFVSITVDLPDPSHLPQAEKQGAVGVDLGV
LALATLSTGETICGPRPHRALLGRVRRLSRSVSRKVKGSTNRHKAKATLAHLHARIAAIRLDALHKLTSDLTRRFHTIGI
ENLTVKGMKGMVKNRHLARSIADMGFFEFRRQLEYKAAMCCAQVVVADRFFASSKMCSTCGHTLKELPLSVRQWACLGCG
TRHDRDVNASVNLKNMAVSSTVSACGEEGAGPRRKTAVQPPSVKQEVSFESV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=271, Percent_Identity=36.5313653136531, Blast_Score=153, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 32311; Mature: 32311

Theoretical pI: Translated: 11.28; Mature: 11.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDRFTLTNDQFDLDASRIRIPRLGWVRMRETLRFAGRIMSATVSRVAARWFVSITVDLP
CCCCEECCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
DPSHLPQAEKQGAVGVDLGVLALATLSTGETICGPRPHRALLGRVRRLSRSVSRKVKGST
CCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
NRHKAKATLAHLHARIAAIRLDALHKLTSDLTRRFHTIGIENLTVKGMKGMVKNRHLARS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
IADMGFFEFRRQLEYKAAMCCAQVVVADRFFASSKMCSTCGHTLKELPLSVRQWACLGCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
TRHDRDVNASVNLKNMAVSSTVSACGEEGAGPRRKTAVQPPSVKQEVSFESV
CCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MHDRFTLTNDQFDLDASRIRIPRLGWVRMRETLRFAGRIMSATVSRVAARWFVSITVDLP
CCCCEECCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
DPSHLPQAEKQGAVGVDLGVLALATLSTGETICGPRPHRALLGRVRRLSRSVSRKVKGST
CCCCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
NRHKAKATLAHLHARIAAIRLDALHKLTSDLTRRFHTIGIENLTVKGMKGMVKNRHLARS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHH
IADMGFFEFRRQLEYKAAMCCAQVVVADRFFASSKMCSTCGHTLKELPLSVRQWACLGCG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
TRHDRDVNASVNLKNMAVSSTVSACGEEGAGPRRKTAVQPPSVKQEVSFESV
CCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]