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The map label for this gene is arrD [H]

Identifier: 182681595

GI number: 182681595

Start: 1208920

End: 1209417

Strand: Reverse

Name: arrD [H]

Synonym: XfasM23_1053

Alternate gene names: 182681595

Gene position: 1209417-1208920 (Counterclockwise)

Preceding gene: 182681596

Following gene: 182681594

Centisome position: 47.7

GC content: 54.42

Gene sequence:

>498_bases
ATGCAGACCATTGGTGAAGAAGGCATTGCACTCATCAAGTTTTTTGAGGGTTGTAAGCTGAGTCCGTACACCTGTCCTGG
TGGTGTGTTGACGATTGGCTATGGTGAGACGGGCAAGCACGTCGTACCAGGGTTGCGGCTTACCAATGAGCAGGAAGCAG
ATGCGCGGTTACGTGCACGCTTAGCGAAAGAATTTGAGCCGGCGGTACGGCGACATGTGAAGGTGACTTTGGCGCAACAT
CAATTTGATGCGCTGGTGTCGCTGAGCTTCAACATTGGTGTGGGCGCGTTTCACCGCTCGACGCTGTTACGCAAGCTTAA
TGCCGGTGATGTGGCTGGTGCGGCGGAGCAGTTTCATGTGTGGAAATGGGCGGGCGGTCGTGTGCAGTCTGGTTTAGTTC
GGCGTCGAAAAGCCGAACGTTGGCTATTTGAAGGTAAAGATTGGCAGGCCGCATTAGCAGCCGAGCATGCGGCGGTGAAG
AAGGCATCACGTGATTGA

Upstream 100 bases:

>100_bases
TCGAATGATTTACTCGCGCCCTGCCCACCTCAGCAGGGCTTTTTTTTATTCAAAGCCAGCGACCGCCTTCGGGCGGTTTT
TTGCGTACTGGAGTCCCCCC

Downstream 100 bases:

>100_bases
TATTGCGGCGCTGCCTACCTGGTGGAAGGAGGCGTTTTATGTGTGCTTGGCGATGGCCACGGGGACGCTGAGTTATTTAA
TGCGTGCACTGGACGCTAAG

Product: lysozyme

Products: NA

Alternate protein names: Endolysin; Lysis protein; Muramidase [H]

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQH
QFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVK
KASRD

Sequences:

>Translated_165_residues
MQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQH
QFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVK
KASRD
>Mature_165_residues
MQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRARLAKEFEPAVRRHVKVTLAQH
QFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHVWKWAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVK
KASRD

Specific function: Essential for lysis of bacterial cell wall, by showing cell wall hydrolyzing activity [H]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 24 family [H]

Homologues:

Organism=Escherichia coli, GI1786768, Length=129, Percent_Identity=37.984496124031, Blast_Score=85, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002196 [H]

Pfam domain/function: PF00959 Phage_lysozyme [H]

EC number: =3.2.1.17 [H]

Molecular weight: Translated: 18205; Mature: 18205

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRAR
CCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEECCCCEECCCCHHHHHHHHH
LAKEFEPAVRRHVKVTLAQHQFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHV
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHEEE
WKWAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVKKASRD
EECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQTIGEEGIALIKFFEGCKLSPYTCPGGVLTIGYGETGKHVVPGLRLTNEQEADARLRAR
CCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEECCCCEECCCCHHHHHHHHH
LAKEFEPAVRRHVKVTLAQHQFDALVSLSFNIGVGAFHRSTLLRKLNAGDVAGAAEQFHV
HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHEEE
WKWAGGRVQSGLVRRRKAERWLFEGKDWQAALAAEHAAVKKASRD
EECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]